PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.20505s0101.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 300aa MW: 34398.4 Da PI: 5.2985 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 109.1 | 5.1e-34 | 53 | 179 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 ppG++F P+deel+ +yLk+ +g++ +l +v i++v+iy+++P++L +k+++++++ +fF+++++k +g r +r + gyW+a+ + Bostr.20505s0101.1.p 53 PPGYKFVPKDEELILHYLKPFSQGDRYSLLNVpIHHVNIYESNPQQLSEKYDKGNEKEWFFISERTKIGKGGRMKRGGDGGYWNASVAT 141 9*************************9999999**************97776665555566666777899******99*********** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k++ + ++ vg k+ L +y g++++g+k dW+m+ey + Bostr.20505s0101.1.p 142 KKINA-GKGIVGHKTALEYYVGKQSNGVKGDWLMQEYWF 179 ****9.9999***************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-42 | 41 | 198 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 38.717 | 52 | 200 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.7E-17 | 53 | 177 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MSIPPRNKRK ARSSLEQQTQ PAEPPRNPEI PSSSSSSAAD NFFSPATKPL VFPPGYKFVP 60 KDEELILHYL KPFSQGDRYS LLNVPIHHVN IYESNPQQLS EKYDKGNEKE WFFISERTKI 120 GKGGRMKRGG DGGYWNASVA TKKINAGKGI VGHKTALEYY VGKQSNGVKG DWLMQEYWFE 180 SSDDNNENKV DHALCKIYLC PKAAKKKKAE EEENEKLKKE EVVLEEEIEQ LDYHQPDQSQ 240 PRDIVYQQPQ YCVLPSQDQK TLPQQLAFPY NLDDSSEFIS FEQQLVIPDD FEDFLNDFH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-22 | 50 | 206 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-22 | 50 | 206 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-22 | 50 | 206 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-22 | 50 | 206 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-22 | 50 | 206 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-22 | 50 | 206 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-22 | 50 | 206 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-22 | 50 | 206 | 18 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.20505s0101.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010431409.1 | 1e-134 | PREDICTED: NAC transcription factor 29-like | ||||
TrEMBL | D7LVH1 | 1e-130 | D7LVH1_ARALL; Uncharacterized protein | ||||
STRING | Bostr.20505s0101.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2793 | 15 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56530.1 | 1e-109 | NAC domain containing protein 64 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.20505s0101.1.p |