PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2021s0124.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family G2-like
Protein Properties Length: 299aa    MW: 32548.8 Da    PI: 7.1014
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2021s0124.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.66.8e-343791155
              G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         kprlrWt+eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  Bostr.2021s0124.1.p 37 KPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRL 91
                         79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.5413494IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-323492IPR009057Homeodomain-like
SuperFamilySSF466895.73E-173692IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-243792IPR006447Myb domain, plants
PfamPF002491.6E-73989IPR001005SANT/Myb domain
PfamPF143795.9E-24135184IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0010628Biological Processpositive regulation of gene expression
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MYSAIRSSLP LDSSLGEYSD GTNLPIDACL VLTTDPKPRL RWTSELHERF VDAVTQLGGP  60
DKATPKTIMR TMGVKGLTLY HLKSHLQKFR LGRQSGKESI DNSKDVSCVA ESQDTGSSST  120
SSLRLAAQEQ NESYQVTEAL RAQMEVQRRL HEQLEYAQVQ RRLQLRIEAQ GKYLQSILEK  180
ACKAIEEQAV AFAGLEAARE ELSELAIKVS ISNGCQGTTS TFDTTKMTIP PLSELAVAIE  240
HKNNCSADSS LTSSTVGSPV SAAMMKKRQR EVFGNGDSVV VGHEAGWVMP RQPSSSIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-193793157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-193793157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-193793157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-193793157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.2021s0124.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2264430.0AK226443.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL06-12-H15.
GenBankAY0877710.0AY087771.1 Arabidopsis thaliana clone 38327 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284218.10.0protein PHR1-LIKE 3 isoform X1
SwissprotQ8LAJ70.0PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBLR0F6H80.0R0F6H8_9BRAS; Uncharacterized protein
STRINGBostr.2021s0124.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35152561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.20.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]