PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2021s0106.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 274aa    MW: 31231.3 Da    PI: 9.7303
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2021s0106.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.85.8e-192067148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd ll+++v+ +G g+W+++ar  g++R +k+c++rw +yl
  Bostr.2021s0106.1.p 20 KGPWTAEEDRLLIEYVRVHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 67
                         79********************************************97 PP
2Myb_DNA-binding52.61.1e-1673117147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Bostr.2021s0106.1.p  73 RGQITPHEESIILELHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 117
                          7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.5161571IPR017930Myb domain
SuperFamilySSF466892.88E-3019114IPR009057Homeodomain-like
SMARTSM007171.1E-161969IPR001005SANT/Myb domain
PfamPF002492.3E-172067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-242174IPR009057Homeodomain-like
CDDcd001673.20E-122267No hitNo description
PROSITE profilePS5129418.5772122IPR017930Myb domain
SMARTSM007172.0E-1472120IPR001005SANT/Myb domain
PfamPF002496.2E-1473117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-2475120IPR009057Homeodomain-like
CDDcd001671.16E-1077118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSWWGVKGGG WGMVEEVWRK GPWTAEEDRL LIEYVRVHGE GRWNSVARLA GLKRNGKSCR  60
LRWVNYLRPD LKRGQITPHE ESIILELHAK WGNRWSTIAR SLPGRTDNEI KNYWRTHFKI  120
KAKPATNNAE KTKSRLLKRQ QFKKQREIEL HQEQQLFQFD QLDMEKIISL LEDNNSSSSS  180
YGGGNVFYAP HQIIDSLKPF GSNPNSLEEQ LQGRFGTVNI PDANTMNEGN AIWDGFWNMD  240
GVDGHGGNLG VVAATAACGP RKPYFHNLVI PFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-252012227128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.2021s0106.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1337050.0AY133705.1 Arabidopsis thaliana clone C103160 putative myb protein (At4g13480) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285781.21e-169transcription repressor MYB6
TrEMBLR0GP771e-168R0GP77_9BRAS; Uncharacterized protein
STRINGBostr.2021s0106.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.11e-146myb domain protein 79