PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2021s0009.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HB-other
Protein Properties Length: 1124aa    MW: 127156 Da    PI: 8.0509
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2021s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox37.44.2e-12554856
                         -HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  8 tkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         ++ q+++Le+++   ++yp+ +e+e+L k+lgLt + V+ WF+ rR + k
  Bostr.2021s0009.1.p  5 SPVQVQALEAFYLAeQMYPTPKEMEDLGKSLGLTVKEVRGWFKRRRSRGK 54
                         788**********88********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.649156IPR001356Homeobox domain
SMARTSM003898.3E-8160IPR001356Homeobox domain
CDDcd000862.42E-10352No hitNo description
Gene3DG3DSA:1.10.10.607.2E-11355IPR009057Homeodomain-like
SuperFamilySSF466894.71E-10356IPR009057Homeodomain-like
PfamPF000461.2E-9554IPR001356Homeobox domain
SMARTSM005711.0E-9353412IPR018501DDT domain
PROSITE profilePS5082712.185353412IPR018501DDT domain
PfamPF027913.0E-8356407IPR018501DDT domain
PfamPF156121.0E-7633673IPR028942WHIM1 domain
PfamPF156133.4E-11756829IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1124 aa     Download sequence    Send to blast
MKRKSPVQVQ ALEAFYLAEQ MYPTPKEMED LGKSLGLTVK EVRGWFKRRR SRGKGVKSLA  60
DDGVGAENRQ SYNKSRIRSS TSSRCDFRAA VEKRCSVGLR KANCQELLTS QHILAKIFRK  120
DGPSLGSEFD HLPSGACKAS WLGILSVDQQ KQRVARKRKI SELMDHTSQD CIEENATVVK  180
HGIGKGLMTV WRVMNPNGRD VSPCVDLLDE RATLPQSSAR NPPHQKKRQK QLASILKQKL  240
LQKRSTEKKR RSINREAELK KDESQRAFKE NCELAVDGKV FKETCQTISI LVDDEELEMR  300
ERQERGNPLT CSFHHPSSGS HGCFLCKDLL PKFPPNSVQM RVPFGLHPWN SSPEPVKKLF  360
KVVHFLYTYS VNLDICPFTL DEFTRAFHDK DSLLLGKIHL SLLKLLLLDV ETELQRGSFS  420
NLSISCKFLA LLQSVESQIL ILDLWKDSLN SLTWTEILRQ ILVAAGYGSV KCAVQSEELS  480
KERRLMKKYG LRLGTLKGEL FKILNEQGNN GLKISELANA PEVAVLNLGT AQEERENSIC  540
STLASDITLF EKISESTYRV RVNCFSEDPD KSQSVSDESG SVDDESDDCS ISSGDEIEHV  600
SENPARRKVK CRKKRKHKSK MREVCSEIDE SHPGEPWLLG LMEGEYSDLS IEEKLDVFVA  660
LIDLLSSGST IRMEDLPRAM VDCAPSIYSH GSGGKIKRSS SNQYSYPRGS WVHGGELHGI  720
KALFKSSDSH PVDSSSIVGA FAKLAADKAN NVHPMQSVYL GSDRRFNRYW LFLGPCNAND  780
PGHRCVFFES SEDGHWEVIN NKEALRALLS VLDDRGRREA RLIESLEKRE SYLCQAMLSR  840
QVTQLETAHF TDIVREDSSS PVSDIDNNLC LSDVANDQFS SHHAAIVFEI GSKREKSLLW  900
SLIQEFDEWI WANFNFNLNA VKHRRRSYLD SLTRCKSCHD LYWRDEKHCK ICHATFEVDI  960
DLEERYAIHA ATCRRKEECD TYPDHKVLSS QLQSLKAAVY AIESAMPEDA LIGVWRKSAH  1020
RLWAKRLRRS STVSEITQVI GDFVGAINED WLWHSSDQGH SNASMGETIS CFPSMPQTTS  1080
ALALWLVKLD TLIAPYVEKA QPERNQLLCR TRNTSRRAST LQL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222230PHQKKRQKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250|UniProtKB:F4HY56}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.2021s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0496400.0AL049640.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T20K18 (ESSA project).
GenBankAL1615340.0AL161534.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020877018.10.0homeobox-DDT domain protein RLT3 isoform X1
SwissprotF4JRF50.0RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBLR0F3L10.0R0F3L1_9BRAS; Uncharacterized protein
STRINGBostr.2021s0009.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96382125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.10.0Homeodomain-like transcriptional regulator