PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.20129s0456.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 255aa    MW: 28398 Da    PI: 9.999
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.20129s0456.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.2e-20116165255
                   AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           g+ GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+++l+g
  Bostr.20129s0456.1.p 116 GFMGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRG 165
                           789******.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.377116173IPR001471AP2/ERF domain
PfamPF008477.4E-14116165IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-20116173IPR016177DNA-binding domain
SMARTSM003802.8E-29116181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-27117172IPR001471AP2/ERF domain
PRINTSPR003673.1E-9117128IPR001471AP2/ERF domain
CDDcd000183.56E-13117148No hitNo description
PRINTSPR003673.1E-9139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MENTIDGHRL QYSVPLSSIF ETRQSFFGTK TPFSDVMAAK EPFSGATSVD ISSLFSSNPK  60
PEFENSRWVM DDSIAAVVGE NVLFGDNNNV PDHFPATETQ GNGVKPWRKM PQKNGGFMGV  120
RKRPWGRWSA EIRDRIGRCR HWLGTFDTAE EAARAYDAAA RRLRGTKAKT NFVIPPHFTE  180
EIAQTQSSTT EENRRRKKKR VNVRKCVKVT SVAQLFGDAN IVTSSSSNGN MTSPFDNLEK  240
MGLELDLKLS LGLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-16108177673Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192199NRRRKKKR
2193199RRRKKKR
3194199RRKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.20129s0456.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010417688.11e-127PREDICTED: ethylene-responsive transcription factor ERF084-like
SwissprotQ9M8M51e-85ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLA0A078HPH51e-112A0A078HPH5_BRANA; BnaC02g22960D protein
STRINGBostr.20129s0456.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.14e-85ERF family protein