PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.20129s0193.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | HSF | ||||||||
Protein Properties | Length: 135aa MW: 15644.2 Da PI: 10.7178 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 63.6 | 4.6e-20 | 12 | 101 | 2 | 98 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT-.-HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhs.nfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 F ++y+i++d++ +++isws+++nsf++++ ef + +Lp+ + nf+SF+ +L+ gFk+vk + + eF hk+F ++ Bostr.20129s0193.1.p 12 FYIRVYQIVDDPSSDSIISWSKSNNSFIIWNVGEFRRMILPTSVEFGiNFSSFISKLHSHGFKRVKGPGQ--------LEFGHKYFVRD 92 8899*************************************98776449******************996........6********** PP XXXXXXXXX CS HSF_DNA-bind 90 kkellekik 98 + ell+++ Bostr.20129s0193.1.p 93 QPELLKNMM 101 *****9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.2E-23 | 8 | 100 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.3E-27 | 8 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 3.5E-23 | 9 | 100 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.0E-18 | 12 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.2E-7 | 12 | 35 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.2E-7 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MVHNFPRELS SFYIRVYQIV DDPSSDSIIS WSKSNNSFII WNVGEFRRMI LPTSVEFGIN 60 FSSFISKLHS HGFKRVKGPG QLEFGHKYFV RDQPELLKNM MVEALTAKRN AKRAKAKTKK 120 DRVQVECLLQ HLRI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 4e-14 | 6 | 100 | 14 | 117 | Heat shock factor protein 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.20129s0193.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010474381.1 | 4e-59 | PREDICTED: heat stress transcription factor A-4a-like | ||||
TrEMBL | R0GJE4 | 2e-59 | R0GJE4_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.20129s0193.1.p | 7e-96 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3839 | 14 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77570.1 | 3e-24 | Winged helix-turn-helix transcription repressor DNA-binding |
Link Out ? help Back to Top | |
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Phytozome | Bostr.20129s0193.1.p |