PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.20129s0096.2.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family SBP
Protein Properties Length: 1031aa    MW: 114194 Da    PI: 8.4327
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.20129s0096.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.52.6e-40124200278
                           -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                   SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                           Cqv++C++dls ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  Bostr.20129s0096.2.p 124 CQVDNCKEDLSIAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTQP 200
                           **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.6E-33116185IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.941121198IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-37122203IPR004333Transcription factor, SBP-box
PfamPF031101.2E-28124197IPR004333Transcription factor, SBP-box
CDDcd002042.61E-6787921No hitNo description
SuperFamilySSF484034.48E-8829924IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.7E-6830935IPR020683Ankyrin repeat-containing domain
PROSITE profilePS502978.614831935IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1031 aa     Download sequence    Send to blast
MDEVGPQVAT PISIHHPMGK KRDLYHQPHW LVPSQQPRND WNPKMWEWDS QRFEAKQVEA  60
ESLRLGNNNN GGSSYEGEER GLDLNLASSF NDVEDTPVVI TRPNKKVRSG SPGSGGGGGN  120
YPKCQVDNCK EDLSIAKDYH RRHKVCEVHS KATKALVGKQ MQRFCQQCSR FHLLSEFDEG  180
KRSCRRRLAG HNRRRRKTQP EEIISRAVAP GNRDNTSNNA NMDVMALLTA LACAQGRNEA  240
RPNGSPGVPQ REQLLQILNK INALPLPMDL VSKLNNIGIL ARKNPDQPSA MNPQNGLNGA  300
SSPSTMDLLA VLSATLGSSA PEAIALLSQG GFGNKESDEK TKLTSSDHGA TTNLEKRTLE  360
FPSFGGGERT SSSNQSPSQD SDSRGQDTRS SLSLQLFTSS PEDESRPTVA SSTKYYSSAS  420
SNPVEDRSPS SSPVMQELFP LQTSPESRRS NNYKNTSPSP STSCLPLELF GASIRGAAAK  480
PNFSVSRHQS GYASSGSDYS PPSLNSDAQD RTGKIVFKLL GKDPSQLPGT LRTEIYSWLS  540
SIPSEMESYI RPGCVILSVY VAMSASAWEQ LEENLLQRVS SLVQDSDFWS NTRFLINTGR  600
QIASYKHGRI RLRKSWRTLN SPELITVSPL AVVAGEETAL TVRGRNLTND GMSFRCAHMG  660
NYASMEVTGT EHRRMKFDEL NVSSFKVQSA NPVSLGRCFI EVENGFRGDS FPLIIANARI  720
CKELNRLEDE FHTKDVIEEQ THNLDRPRSR EEVLCFLNEL GWLFQRKWTP NIHGESDFSL  780
PRFKFLLVCS VERDYYSLIR TLLNMMVERN LGEDGLMNKE SLDMLAEIQL LNRAVKRRNT  840
KMVETLIHYS VNPSTKNFIF LPNIAGPGDI TPLHLAASTS GSDDMIDVLT NDPQEIGLSC  900
WNSLLDATGQ TPFSYAAMRN NHSYNTLVAR KLADKRNGQI SLNIENSIDQ IGLSKRLSSE  960
LKRSCNTCAS VALKYQKKVS GSHRLFPTPI IHSMLAVATV CVCVCVFMHA FPIVRQGSHF  1020
SWGGLDYGSI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-30110197184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1832837RAVKRR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.20129s0096.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2429580.0AJ242958.1 Arabidopsis thaliana partial mRNA for SPL1-Related3 protein (SPL1R3 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010471811.10.0PREDICTED: squamosa promoter-binding-like protein 16 isoform X2
SwissprotQ700C20.0SPL16_ARATH; Squamosa promoter-binding-like protein 16
TrEMBLD7KTV10.0D7KTV1_ARALL; Uncharacterized protein
STRINGBostr.20129s0096.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76580.10.0SBP family protein