PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.19427s0054.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | GRF | ||||||||
Protein Properties | Length: 527aa MW: 56207.1 Da PI: 9.5182 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.3 | 7.6e-25 | 195 | 239 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Bostr.19427s0054.1.p 195 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEG 239 79****************************************985 PP | |||||||
2 | QLQ | 51.5 | 3.1e-18 | 131 | 167 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++F+ +Q+++L++Q+l+yKy+ an+PvP+ Ll+ ++k Bostr.19427s0054.1.p 131 GPFSLTQWAELEQQALIYKYITANVPVPSSLLLSLKK 167 59******************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.3E-10 | 131 | 167 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.2E-12 | 132 | 164 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.723 | 132 | 167 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.954 | 195 | 239 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.4E-21 | 196 | 238 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 527 aa Download sequence Send to blast |
MDLGVRVSGH ENGSSPGQTE LGSGFSKKQE RSGFDGEDCW RSSKLARTST DGFSSSSAAT 60 KTLSFHQGIP LLRSTTIDPR REQEHMLSFS SASDKSDVSP YLQYCRNSGY GLGGMMNTSS 120 MHGNLLTGVK GPFSLTQWAE LEQQALIYKY ITANVPVPSS LLLSLKKSFF PYGSLPPSSF 180 GWGSFHLGFS GGNMDPEPGR CRRTDGKKWR CSRDAVPDQK YCERHINRGR HRSRKPVEGQ 240 NGHNTNAAAA SAAASAAAAM SKAAGTSAVA MRGSDNNNSL AAAVGTYHHA NNQSTDSLAN 300 RVQNSRGALV FPATMNLQSK ETHQKQSNNP FEFGLISSDS LLNPSHKQGS YGNSSKGFGS 360 YLDFSNQAKH CGNHHNVNSW PEELKSDWTQ LSMSISMAPS SPVQDKLALS PLRLSREYDP 420 AIHMGLGVNT EFLEPGKKAN NWIPTSWGNN NSMGGPLGEV LNSTTNSPKF GSSPTGVLQK 480 STFGSLSNSS SGSSTVIGDN SNKNGDGKDP LGPTTLMNTS ATAPSL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:22419826, ECO:0000269|PubMed:22751317}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.19427s0054.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493560 | 0.0 | AB493560.1 Arabidopsis thaliana At2g22840 mRNA for hypothetical protein, partial cds, clone: RAAt2g22840. | |||
GenBank | AY102634 | 0.0 | AY102634.1 Arabidopsis thaliana transcription activator (GRF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_179869.1 | 0.0 | growth-regulating factor 1 | ||||
Swissprot | O81001 | 0.0 | GRF1_ARATH; Growth-regulating factor 1 | ||||
TrEMBL | A0A178VNQ3 | 0.0 | A0A178VNQ3_ARATH; GRF1 | ||||
STRING | Bostr.19427s0054.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1454 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 0.0 | growth-regulating factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.19427s0054.1.p |
Publications ? help Back to Top | |||
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