PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.19427s0048.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 275aa MW: 29948.7 Da PI: 8.067 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.4 | 2.4e-18 | 112 | 166 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+ +++++ ++++ LA++l+L+ rqV vWFqNrRa+ k Bostr.19427s0048.1.p 112 RKKLRLTKEQSALLEESFKHHSTLNPKQKKVLARQLNLKPRQVEVWFQNRRARTK 166 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 123.9 | 7.6e-40 | 112 | 201 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq++lLEesF+++++L+p++K+ lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en rL+ke +eL+ Bostr.19427s0048.1.p 112 RKKLRLTKEQSALLEESFKHHSTLNPKQKKVLARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENMRLQKEIQELK- 199 69*************************************************************************************9. PP HD-ZIP_I/II 90 el 91 +l Bostr.19427s0048.1.p 200 TL 201 54 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.054 | 108 | 168 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-17 | 109 | 171 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.0E-15 | 110 | 172 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.14E-18 | 110 | 176 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 8.4E-16 | 112 | 166 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.53E-17 | 112 | 169 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 143 | 166 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.7E-9 | 168 | 201 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 8.5E-23 | 168 | 211 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MGFDDSCNTG LVLGLGLSTT PTNYNNVIKR SSGYKLEPSL TLSLSGDPSF TVVTGPDQLS 60 RQTSSHSGVS SFSSGRVVKR ERDGGEESPE EEDTTERVIS DYHEDEEGVS ARKKLRLTKE 120 QSALLEESFK HHSTLNPKQK KVLARQLNLK PRQVEVWFQN RRARTKLKQT EVDCEFLKKC 180 CETLTDENMR LQKEIQELKT LKLTHLPFYM HMPASTLTMC PSCERIGAGG GNGGGGGGSV 240 ATAVVVDGGT AKGAFSISSK PHFFNPFTNP SAAC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 160 | 168 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.19427s0048.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229218 | 0.0 | AK229218.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-50-N10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020885765.1 | 1e-168 | homeobox-leucine zipper protein HAT9 | ||||
Swissprot | P46603 | 1e-151 | HAT9_ARATH; Homeobox-leucine zipper protein HAT9 | ||||
TrEMBL | A0A1J3HM02 | 1e-167 | A0A1J3HM02_NOCCA; Homeobox-leucine zipper protein HAT9 | ||||
STRING | Bostr.19427s0048.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1671 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22800.1 | 1e-124 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.19427s0048.1.p |
Publications ? help Back to Top | |||
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