PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19427s0033.2.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 26343.8 Da    PI: 9.295
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19427s0033.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.52.7e-261059251
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          +i++++ rqvtfskRr+g++KKA+EL +LCdae+++iifs+t+kly+++s
  Bostr.19427s0033.2.p 10 KIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEICLIIFSNTDKLYDFAS 59
                          79**********************************************86 PP
2K-box76.38.1e-2681171999
                 K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                           + +++ + +q+e++ L++e+++Lq+++R+l Ge+L+ L  keL++Le+qLe sl+ iR kK+++l+++i+el++k + ++++  +L++k
  Bostr.19427s0033.2.p  81 NPASEVKFWQREAETLRQELHSLQENHRQLTGEQLNGLGAKELHNLESQLEMSLRGIRMKKEQILTNEIKELRRKWNLVDHDYLELSRK 169
                           567889**********************************************************************9999999999999 PP

                 K-box  98 le 99 
                           ++
  Bostr.19427s0033.2.p 170 VQ 171
                           86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.857161IPR002100Transcription factor, MADS-box
SMARTSM004322.5E-37160IPR002100Transcription factor, MADS-box
CDDcd002651.23E-38278No hitNo description
SuperFamilySSF554555.23E-31291IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-253859IPR002100Transcription factor, MADS-box
PfamPF014861.0E-2284170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.07286176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048578Biological Processpositive regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGRGKIVIQK IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEICLIIFSN TDKLYDFASS  60
SVKSTIERYN KTKMEQQQLL NPASEVKFWQ REAETLRQEL HSLQENHRQL TGEQLNGLGA  120
KELHNLESQL EMSLRGIRMK KEQILTNEIK ELRRKWNLVD HDYLELSRKV QRIHQENVEL  180
YKKAYATSNT NGLGHHELVD AADDSHAQVR LQLSQPEQSH YETSSKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-19169169MEF2C
5f28_B9e-19169169MEF2C
5f28_C9e-19169169MEF2C
5f28_D9e-19169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19427s0033.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935580.0AB493558.1 Arabidopsis thaliana At2g22630 mRNA for hypothetical protein, partial cds, clone: RAAt2g22630.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294943.11e-150agamous-like MADS-box protein AGL17
SwissprotQ388401e-147AGL17_ARATH; Agamous-like MADS-box protein AGL17
TrEMBLR0FYJ81e-149R0FYJ8_9BRAS; Uncharacterized protein
STRINGBostr.19427s0033.1.p1e-167(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22630.11e-150AGAMOUS-like 17
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]