PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19424s1090.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 265aa    MW: 29719.8 Da    PI: 7.3019
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19424s1090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.35.5e-3230139199
                           EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                           f+k ltpsdv+k++rlv+pk++ae++              +e+++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD
  Bostr.19424s1090.1.p  30 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnnggggddVATTEKGMLLSFEDESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGD 118
                           99*****************************9998875566799********************************************* PP

                           EEEEEE-SS.SEE..EEEEE-S CS
                    B3  79 fvvFkldgr.sefelvvkvfrk 99 
                           +v F+++ r +  +l+++++r+
  Bostr.19424s1090.1.p 119 VVFFQRH-RfDLHRLFIGWRRR 139
                           *****65.44788889999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-4020147IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.98E-3128140IPR015300DNA-binding pseudobarrel domain
CDDcd100175.63E-2929130No hitNo description
PROSITE profilePS5086313.33830140IPR003340B3 DNA binding domain
SMARTSM010192.9E-2430140IPR003340B3 DNA binding domain
PfamPF023623.2E-2930139IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSVNHYHNTL SLQQHHHQND VAVAQRESLF EKSLTPSDVG KLNRLVIPKQ HAEKYFPLNN  60
GGGGDDVATT EKGMLLSFED ESGKCWKFRY SYWNSSQSYV LTKGWSRYVK DKHLDAGDVV  120
FFQRHRFDLH RLFIGWRRRG EASSSPAVSV VSQEPLVNTT AYWSGLTTPY RQVHASTAYP  180
NIHHEYSHYG AVADQAQSTP TEVAGSSRTV RLFGVNLECH GDAVESPPRT DGYNGQHIYY  240
YSTPHPMNIS FAGEALEQVG DGRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-50231391113B3 domain-containing transcription factor NGA1
5os9_B6e-50231391113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19424s1090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4410760.0AJ441076.1 Arabidopsis thaliana mRNA for putative auxin response factor 32 (arf32 gene).
GenBankAK1752810.0AK175281.1 Arabidopsis thaliana mRNA for putative DNA binding protein, complete cds, clone: RAFL21-71-N13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884852.11e-178B3 domain-containing protein At3g11580
SwissprotQ8RYD31e-173Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLD7LAP41e-176D7LAP4_ARALL; Uncharacterized protein
STRINGBostr.19424s1090.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.11e-174B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]