PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19424s1041.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 329aa    MW: 37193.6 Da    PI: 8.6092
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19424s1041.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.94.4e-142721889
                          --HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3 18 lpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                          +p  f+++h  g  +e++  ++l++  s  +Wevk+  +  +   +lt+GW++F+ +++L++gD+vvF++dg+  
  Bostr.19424s1041.1.p  2 IPMAFFSRHieGTTNEGNAVVKLKSdVSDITWEVKM--EMDG--RILTEGWQKFATSHDLRVGDIVVFRHDGDLL 72
                          8999**9**98666678888999987899*******..4443..369**********************887533 PP
2B3551.5e-17125217499
                           E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                    B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                           + +++++l++++l  p  f +++g+ +++  +++l +e+g+ W++ l+  k +g++++++GW++F+ an+L+++Df+++kl++ +++++
  Bostr.19424s1041.1.p 125 ARVTASNLRKDILFPPVGFSRSNGLMNRK-CQIILSNEDGKPWTLILS-HKPDGKVYIRSGWRSFCFANRLRANDFLTLKLVK-TGATP 210
                           5678999999*9***********777544.59***************4.33444699************************98.8999* PP

                           EEEEE-S CS
                    B3  93 vvkvfrk 99 
                           v++++++
  Bostr.19424s1041.1.p 211 VLQLCSS 217
                           ***9986 PP
3B347.14.4e-15225314191
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                           f++ ++++++ k+  l+lp +f++++g++k++  ++tl d+ g + +  l+ ++k g++ l+k W+eF++ ng+k g+++ ++l+++ +
  Bostr.19424s1041.1.p 225 FLTLTLKPYNIKNYKLCLPSTFVKANGIEKAR--KITLVDRYGIKRTTSLKPDNKHGQMRLGKEWREFCDVNGVKMGESFKLELIKEeE 311
                           67778899******************999766..7********999999988********************************97745 PP

                           EE. CS
                    B3  89 efe 91 
                           +++
  Bostr.19424s1041.1.p 312 DTS 314
                           443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.169181IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.0E-18288IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.2E-7281IPR003340B3 DNA binding domain
SuperFamilySSF1019361.94E-15288IPR015300DNA-binding pseudobarrel domain
CDDcd100173.75E-13276No hitNo description
PfamPF023624.0E-10270IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-18115217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-19116217IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.6E-22122218IPR003340B3 DNA binding domain
CDDcd100171.70E-18122216No hitNo description
PROSITE profilePS5086313.112122217IPR003340B3 DNA binding domain
PfamPF023627.1E-16124217IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-17218322IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-17221323IPR015300DNA-binding pseudobarrel domain
CDDcd100172.72E-13224310No hitNo description
PROSITE profilePS5086311.194225323IPR003340B3 DNA binding domain
SMARTSM010198.0E-18225324IPR003340B3 DNA binding domain
PfamPF023628.3E-14225313IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
NIPMAFFSRH IEGTTNEGNA VVKLKSDVSD ITWEVKMEMD GRILTEGWQK FATSHDLRVG  60
DIVVFRHDGD LLFHVTCLGP SCCEIQYDDD DVIQISSVET DSDSEKNKNT ADARSSSDNH  120
CCFVARVTAS NLRKDILFPP VGFSRSNGLM NRKCQIILSN EDGKPWTLIL SHKPDGKVYI  180
RSGWRSFCFA NRLRANDFLT LKLVKTGATP VLQLCSSSTT SQYRFLTLTL KPYNIKNYKL  240
CLPSTFVKAN GIEKARKITL VDRYGIKRTT SLKPDNKHGQ MRLGKEWREF CDVNGVKMGE  300
SFKLELIKEE EDTSTHLLKF CSKVLNFP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19424s1041.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010488930.10.0PREDICTED: B3 domain-containing protein REM10-like
TrEMBLR0HQ081e-177R0HQ08_9BRAS; Uncharacterized protein (Fragment)
STRINGBostr.19424s1041.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.11e-77B3 family protein