PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.19424s0999.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | G2-like | ||||||||
Protein Properties | Length: 335aa MW: 35909.8 Da PI: 7.0116 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.5 | 2e-30 | 101 | 154 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Bostr.19424s0999.1.p 101 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 154 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.059 | 98 | 157 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.4E-20 | 98 | 158 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-30 | 100 | 159 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.7E-24 | 102 | 154 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-7 | 104 | 153 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MREDDSDWFA RWEEELPSPE ELMPLSQSLI SPDLALAFDI RSPSHGNGNS NQPHHHQTTP 60 PTPSQLQLPS SQANSSAEFA ADSADLGSGA AGDEPARTLK RPRLVWTPQL HKRFVDAVAH 120 LGIKNAVPKT IMQLMSVDGL TRENVASHLQ KYRLYLKRMQ GLSSGGGAGS DPATDRLFAS 180 SPVPAHFLHP NRVPSSDHFM PSFVPIATLQ QQQQMAAAAA AAAAAAANPH LQPPQFHHRQ 240 IAAAHFGSPT NGGFHSPTSN GQFGSPTSNG FGSPTNGKFD PSFLARQTQP QQQPIHRMST 300 PSLHSPVGNY AEDLESANAN GGRTVLTLFP TRDD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 1e-32 | 101 | 157 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.19424s0999.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATAC011708 | 0.0 | AC011708.8 Arabidopsis thaliana chromosome III BAC T7M13 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006298091.1 | 0.0 | transcription factor MYBC1 | ||||
Swissprot | O22210 | 5e-71 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | R0HMQ6 | 0.0 | R0HMQ6_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.19424s0999.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1549 | 27 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10760.1 | 1e-153 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.19424s0999.1.p |
Publications ? help Back to Top | |||
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