PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19424s0974.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family CAMTA
Protein Properties Length: 861aa    MW: 97879.8 Da    PI: 7.2271
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19424s0974.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1161.31.7e-50291462118
                  CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 
                           l+e k+rwl+++ei+aiL n + +++  ++ + p+sg++iL++rk++r+frkDG++wkkkkdg+tv+E+he+LKvg+ e +++yYah+e
  Bostr.19424s0974.1.p  29 LEEaKSRWLRPNEIHAILSNPKYFTINVKPVNLPNSGRIILFDRKMLRNFRKDGHNWKKKKDGRTVKEAHEHLKVGNEERIHVYYAHGE 117
                           55669************************************************************************************ PP

                  CG-1  90 enptfqrrcywlLeeelekivlvhylevk 118
                           +++tf rrcywlL++++e+ivlvhy++++
  Bostr.19424s0974.1.p 118 DKTTFVRRCYWLLDKARENIVLVHYRDTQ 146
                           **************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143774.2225151IPR005559CG-1 DNA-binding domain
SMARTSM010761.1E-7928146IPR005559CG-1 DNA-binding domain
PfamPF038591.6E-4431144IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.9E-5319407IPR013783Immunoglobulin-like fold
SuperFamilySSF812964.43E-16320407IPR014756Immunoglobulin E-set
PfamPF018335.4E-6321406IPR002909IPT domain
PfamPF127963.3E-6510586IPR020683Ankyrin repeat-containing domain
CDDcd002042.78E-14514616No hitNo description
SuperFamilySSF484031.13E-15515622IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.5E-15517619IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.3524589IPR020683Ankyrin repeat-containing domain
SMARTSM002482.7E-6557586IPR002110Ankyrin repeat
PROSITE profilePS5008811.808557589IPR002110Ankyrin repeat
SuperFamilySSF525404.78E-5697772IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.474706730IPR000048IQ motif, EF-hand binding site
PfamPF006120.064706722IPR000048IQ motif, EF-hand binding site
SMARTSM0001581721743IPR000048IQ motif, EF-hand binding site
SMARTSM000150.022744766IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.091745769IPR000048IQ motif, EF-hand binding site
PfamPF006120.015746766IPR000048IQ motif, EF-hand binding site
SMARTSM0001513819841IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.224820849IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 861 aa     Download sequence    Send to blast
MDGDGSGRLI GSEIHGFHTL QDLDVQTMLE EAKSRWLRPN EIHAILSNPK YFTINVKPVN  60
LPNSGRIILF DRKMLRNFRK DGHNWKKKKD GRTVKEAHEH LKVGNEERIH VYYAHGEDKT  120
TFVRRCYWLL DKARENIVLV HYRDTQEAAI SSGESNSSPI SVSDQKFSNP VAAEDIDFSI  180
ENSHYLASNN SPVVRNHDIS LHDINTLDWD ELLIPTDLNN QSAPTVDDLS YFTEPLQNAA  240
NGSAEPLNVT VADESLDDLL NNGPQSRESF GRWMNSFIGE SNGSLEDPSF EPMVTLEQDP  300
LLAPQALFHP QSNIPEQVFN ITDVSPAWAY SSEKTKILVT GFLHDSYKHL ERSNLFCICG  360
DSCVPAEYLQ AGVYRCFIPP HSPGMVNLYL SVDGNKPISQ CFRFEYRSVP VLDKTIAEDD  420
QESKWEEFEF QVRLSHLLFT SSNKINVLSS KISPPNLRDA KKLASKTSHL LNSWAYLIKS  480
IQGNKVSFDQ AKDHLFELTL KNRLKEWLME KVLEGRNTLD YDSKGLGVIH LCAILGYTWS  540
IPLFSLSGLS LNFRDKHGWT ALHWAAYYGR EKMVAALLSA GARPNLVTDP TKDNLGGCMA  600
ADLAQQNGYD GLAAYLAEKC LVAQFRDMKI AGNISGDLEA CKAEMLNQGT LPQDEQSLKD  660
ALAAYRTAAE AAARIQGAFR EKALKAARSS VIQFANKEEE AQSIIAAMKI QNAFRKYDAR  720
RKIEAAYRIQ CRFQTWKMRR EYLNMRRQAI RIQAAFRGLQ ARRQYKKIVW SVGVLEKAVL  780
RWRQKRKGFR GLQVAAEEDP LGEAEEDFYK TSQRQAEERL ERSVVRVQAM FRSKKAQEDY  840
RRMKLTHEEA QLEYNCLEDL *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:12218065, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19424s0974.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5100270.0AY510027.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010487565.10.0PREDICTED: calmodulin-binding transcription activator 6
SwissprotQ9LSP80.0CMTA6_ARATH; Calmodulin-binding transcription activator 6
TrEMBLR0G3E30.0R0G3E3_9BRAS; Uncharacterized protein
STRINGBostr.19424s0974.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40212758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]