PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.19424s0822.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 312aa MW: 35325.5 Da PI: 6.7893 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.3 | 1e-55 | 5 | 131 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeel+++yL++kv++ + +++ +vd++k+ePwdLp+k++ +ekewyfFs+rd+ky+tg r+nrat++gyWk+tgkd Bostr.19424s0822.1.p 5 LPPGFRFHPTDEELITHYLCRKVSDIGFAG-KAVVDVDLNKCEPWDLPAKASMGEKEWYFFSQRDRKYPTGLRTNRATEAGYWKTTGKD 92 79*************************999.88***************999999*********************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ke+++ +g lvg+kktLvfykgrapkgek++Wvmheyrle Bostr.19424s0822.1.p 93 KEIYR-SGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 131 *****.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-64 | 3 | 152 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.521 | 5 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-29 | 6 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MEDNLPPGFR FHPTDEELIT HYLCRKVSDI GFAGKAVVDV DLNKCEPWDL PAKASMGEKE 60 WYFFSQRDRK YPTGLRTNRA TEAGYWKTTG KDKEIYRSGV LVGMKKTLVF YKGRAPKGEK 120 SNWVMHEYRL ESKQPFNPTN KEEWVVCRVF EKSTATKKAQ EQQPQSSQPS FGSPCDANSS 180 MANEFEDIEL PNLNSNSSTI DYNNHIHQHS QRIVYSENNT TSTAGLNMNM ASTNLPSWTT 240 SLLGPPLSPI NSLLLKAFQI RNTYSFPKEM IPNFNPSPLQ QGVSNIMQNG SSSSQVQPEP 300 QEEAYNMDSI W* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-60 | 4 | 158 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-60 | 4 | 158 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-60 | 4 | 158 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-60 | 4 | 158 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-59 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-59 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-59 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-59 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-59 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-59 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-59 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-59 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 9e-60 | 4 | 158 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 9e-60 | 4 | 158 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00364 | DAP | Transfer from AT3G18400 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.19424s0822.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026658 | 0.0 | AB026658.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYF24. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010487765.1 | 0.0 | PREDICTED: NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 7e-83 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A178VF42 | 0.0 | A0A178VF42_ARATH; NAC058 | ||||
STRING | Bostr.19424s0822.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5527 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 0.0 | NAC domain containing protein 58 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.19424s0822.1.p |
Publications ? help Back to Top | |||
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