PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.19424s0575.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | GATA | ||||||||
Protein Properties | Length: 217aa MW: 23976.7 Da PI: 5.3967 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.2 | 1.1e-18 | 174 | 210 | 1 | 35 |
GATA 1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ nC++ +Tp+WRrgp g+k+LCnaCG+++rk+++ Bostr.19424s0575.1.p 174 CTnmNCNALTTPMWRRGPLGPKSLCNACGIKFRKEEE 210 55559*****************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 5.3E-8 | 170 | 216 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.99E-10 | 172 | 210 | No hit | No description |
Pfam | PF00320 | 2.5E-16 | 174 | 210 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.6E-12 | 177 | 210 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.22E-10 | 178 | 207 | No hit | No description |
PROSITE profile | PS50114 | 11.53 | 178 | 206 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MENELDLTLK LGLPNPTVET HLSLNTSTTT DDQGTNVVDG GRGDNNNDGG EVLNLRRALW 60 GDDEVIDDEG ARNNVDINIR VYNYVFQQFA GAPNTLNFDP YPMPPSPEPE PARDPVTPPA 120 SDEYVLIDVP ARRAHRNNTL LMANAWNESP NAYAKRLRGC SGYCGGRIEG TRKCTNMNCN 180 ALTTPMWRRG PLGPKSLCNA CGIKFRKEEE RKSKRN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.19424s0575.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010488061.1 | 1e-102 | PREDICTED: GATA transcription factor 29-like | ||||
Swissprot | Q9LT45 | 7e-83 | GAT29_ARATH; GATA transcription factor 29 | ||||
TrEMBL | R0GBK1 | 1e-92 | R0GBK1_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.19424s0575.1.p | 1e-158 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10652 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20750.1 | 8e-69 | GATA transcription factor 29 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.19424s0575.1.p |
Publications ? help Back to Top | |||
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