PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19424s0561.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 345aa    MW: 39195.4 Da    PI: 6.825
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19424s0561.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88e-05188207120
                           EEETTTTEEESSHHHHHHHH CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                           ++Cp C k+F+r  n++ H+
  Bostr.19424s0561.1.p 188 FSCPLCFKTFNRYNNMQMHM 207
                           89*****************9 PP
2zf-C2H213.10.0003272294123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           + C  Cgk F  k + ++H +++
  Bostr.19424s0561.1.p 272 FACRRCGKAFAVKGDWRTHEKNC 294
                           78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66188215IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-5188207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280190210IPR007087Zinc finger, C2H2
SuperFamilySSF576672.29E-6258292No hitNo description
Gene3DG3DSA:3.30.160.601.5E-5259292IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767272292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MSDPACIFNN GYVDYHDYSF NYSTSLSHIY NSHGNFYYPH HITNPNINTN HNPTSPDSPP  60
LREALPLLSL SPIHKHQEPI AHHHEYYFME TTETSSNSNF LDQCQESHHH DVTVDLHLGL  120
PNLGDGVSSS SDVVLDSTDD QEHHQDQGVE VTLASDHDDD HGGLQRGNHL HHFWIPTPSQ  180
ILMGPTQFSC PLCFKTFNRY NNMQMHMWGH GSQYRKGPES LRGTQPTAML KLPCYCCAPG  240
CKNNIDHPRA RPLKDFRTLQ THYKRKHGVR PFACRRCGKA FAVKGDWRTH EKNCGKLWYC  300
SCGSDFKHKR SLKDHVKAFG NGHVPCCGID HDEEEAASDV EQQE*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19424s0561.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118110.0AJ311811.2 Arabidopsis thaliana mRNA for WIP4 protein (At3g20880 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019092955.10.0PREDICTED: zinc finger protein WIP4
RefseqXP_019096225.10.0PREDICTED: zinc finger protein WIP4
SwissprotQ8W0300.0ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLA0A178VN070.0A0A178VN07_ARATH; WIP4
STRINGBostr.19424s0561.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20880.10.0WIP domain protein 4
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]