PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19424s0507.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 763aa    MW: 86657 Da    PI: 8.3853
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19424s0507.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.76.1e-094681340
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                           W++eE e+++++ +++G++ Wk++a+ +   R+++++
  Bostr.19424s0507.1.p 46 QWSKEELERFYEGYRKFGKE-WKKVAAFVH-SRSAEMV 81
                          6*******************.********9.9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.21E-104292IPR009057Homeodomain-like
SMARTSM007172.0E-44391IPR001005SANT/Myb domain
PfamPF002491.1E-74681IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-54682IPR009057Homeodomain-like
CDDcd001672.03E-54789No hitNo description
PfamPF065843.6E-30239338IPR033471DIRP domain
SMARTSM011354.7E-61239340IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MAPSRSKKSK YKKTPRGKTV SPQKDEENMS KTKQRKRKLS DMLGPQWSKE ELERFYEGYR  60
KFGKEWKKVA AFVHSRSAEM VEALYTMNKA YLSLPEGTAS VVGLNAMMTD HYSVLHGGSD  120
SEQENNEGIE TPRSAPKRSR VKSSDHPSIG LEGLSDRLQF RSSSGFLPSL TKRRTGSSAP  180
SNAVIKKQVN LPTKVRSRRK IVTEKPLTID DGKFSEILEK FSHCISSFRA RRWCLFEWFY  240
SAIDYPWFAR QEFVEYLDHV GLGHVPRLTR VEWGVIRSSL GKPRRFSEQF LKEEKEKLYL  300
YRDSVRKHYD ELNTGMREGL PMDLARPLNV SQRVISLHPK SREIHDGSVL TVDHCRYRIQ  360
FDHPELGVEF VKDTECMPLN PLENMPASLA RHYAFSNYHI QNPSEEKMQE RVKESTPEGY  420
LKLSCETGHL LSSPNYNISN SLKQEKVDIS SSNPQAQDGV DEALDLQLFN SQPSTNGHIQ  480
AREADVQALS ELARALDKKE LVLRELKCMN NEVVESQKDG YNALKDSESF KKQYAAVLFQ  540
LSEINEQVSL ALLGLRQRNT YQENVPYASI RRMSKSGEPD GQLTCLDSYT SDTNGFHVSE  600
IVESSRIKAR KMVYRAVQAL ALLRKDENNV VNMEEAIDFV NNQLSIDQTE GSSVHQRQGA  660
QDQRFPSTPN PPSSTPANDF HLNPPDQNDL QIPSELVSRC MATLLMIQKC TERQFPPSEV  720
AQVLDSAVAS LQPCCSQNLP IYTEIQKCMG IIRNQILALV PS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19424s0507.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5834970.0AJ583497.1 Arabidopsis thaliana mRNA for always early 3 protein (Ataly3 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020887223.10.0protein ALWAYS EARLY 3 isoform X1
RefseqXP_020887224.10.0protein ALWAYS EARLY 3 isoform X1
RefseqXP_020887225.10.0protein ALWAYS EARLY 3 isoform X1
SwissprotQ6A3320.0ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLD7L0S70.0D7L0S7_ARALL; Always early protein 3
STRINGBostr.19424s0507.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM127142427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding
Publications ? help Back to Top
  1. Pfaff C, et al.
    ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development.
    Plant Physiol., 2018. 177(1): p. 226-240
    [PMID:29540591]