PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19424s0458.2.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family CO-like
Protein Properties Length: 369aa    MW: 40639.9 Da    PI: 6.5637
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19424s0458.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box223.4e-07244339
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                          e+kC+++e  ++ ++C+++   lC +C ++ H+       Ht+
  Bostr.19424s0458.2.p  2 EPKCDHCETAQAVIYCKSDLAKLCLNCDVHVHSAnplshrHTR 44
                          689******99********************966888855655 PP
2CCT59.61.1e-20311353143
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                           R++a+lRYkeKr +R F K+irY+sRKa+A++R+RvKGrFvk+
  Bostr.19424s0458.2.p 311 RNKAKLRYKEKRLKRSFGKQIRYASRKARADTRKRVKGRFVKA 353
                           899**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501198.958147IPR000315B-box-type zinc finger
SMARTSM003361.1E-8147IPR000315B-box-type zinc finger
PfamPF006431.8E-5244IPR000315B-box-type zinc finger
CDDcd000211.67E-6347No hitNo description
PfamPF062032.8E-15311353IPR010402CCT domain
PROSITE profilePS5101714.485311353IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEPKCDHCET AQAVIYCKSD LAKLCLNCDV HVHSANPLSH RHTRSLICQK CFSQPAVIRC  60
LDEKYSYCQG CHLQASNCSV LGHRLQSLNP FSGCPSPTDF VRMWSSILEP SVSGLVSPFV  120
GSLPLNDPSN AMFGMAKINE LDGLITSSYS TVPHNISYTQ NLSDQSSFFP VKSKGCPDLV  180
LKLDEDEEDL CEGLILDNAP LNFDVGDDII GCSSEEHIEP DHTTTSPGQQ DCASYQSGPL  240
QMNINTTGLP LPLPPSPVLF GQIHPTMSLT ISNITGESSA ADYQDRGISP GFIMSEAPWE  300
SNLEVRCPQA RNKAKLRYKE KRLKRSFGKQ IRYASRKARA DTRKRVKGRF VKAVDNYDYD  360
PSSPSNNQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19424s0458.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936261e-147AB493626.1 Arabidopsis thaliana At3g21880 mRNA for hypothetical protein, partial cds, clone: RAAt3g21880.
GenBankAP0007391e-147AP000739.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MEK6.
GenBankCP0026861e-147CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010488213.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 12-like isoform X1
SwissprotQ9LJ440.0COL12_ARATH; Zinc finger protein CONSTANS-LIKE 12
TrEMBLV4M5W20.0V4M5W2_EUTSA; Uncharacterized protein
STRINGBostr.19424s0458.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.11e-178B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ordoñez-Herrera N, et al.
    The Transcription Factor COL12 Is a Substrate of the COP1/SPA E3 Ligase and Regulates Flowering Time and Plant Architecture.
    Plant Physiol., 2018. 176(2): p. 1327-1340
    [PMID:29187570]