PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.19424s0383.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | CPP | ||||||||
Protein Properties | Length: 635aa MW: 69257.8 Da PI: 6.5934 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.5 | 4e-16 | 346 | 384 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk+ Bostr.19424s0383.1.p 346 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKR 384 589**********************************97 PP | |||||||
2 | TCR | 51.2 | 2.5e-16 | 431 | 469 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN Bostr.19424s0383.1.p 431 RHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNA 469 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.5E-18 | 345 | 386 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.337 | 346 | 471 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.4E-11 | 348 | 383 | IPR005172 | CRC domain |
SMART | SM01114 | 3.7E-17 | 431 | 472 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 9.8E-12 | 433 | 469 | IPR005172 | CRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 635 aa Download sequence Send to blast |
MRDCLFLENM DTPQKSITQI GTPVSKLKVE DSPVFNYICS LSPIKSIKSI PIAQTLSSLN 60 FTSPPSVFTS PHAVSHNESR FRNQINSSDP SKDGVASNEV ASIGEQGEEE ALIEIESSQI 120 LKNDCNTPRV IIDAGDNGCC EDGGMDLQKM CDNVKAKSDT PDWETLISGS AELIYGSSSE 180 SEAFSCLLKR TSNSEARVHG GTMSTLEPVS NTYVANNESE SFDALSIRRC LDFAIPGNNQ 240 QTLGESSSSC VVPSIGLHLN AITMSSKDNN VANEYSFSGN IKDGLQSSTT PVLHLEHDIV 300 RENEIGKDAS QAVEEFPKSS ALKELNPISP KKKRRKSEQS GEGELSCKRC NCKKSKCLKL 360 YCECFAAGVY CIEPCSCIDC FNKRIHEDVV LATRKQIESR NPLAFAPKVI RSSDSIIEVG 420 DDTSKTPASA RHKRGCNCKK SNCLKKYCEC YQGGVGCSIN CRCEGCKNAF GRKDGSSFEQ 480 DEENEISGKS ETAKTQQNVE LFNPAAPPST PIPVRQALAQ LPISSNNRLI PPVSHFHHGV 540 FGSSSSGIYN IRKPEMSMLS HSRIETITED VDDMPENHLI QSPITNMKAV VSPNSKRVSL 600 PHLDSSESTP WRRNGGGRKL ILSIPTFPSL THHR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 8e-17 | 348 | 468 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 8e-17 | 348 | 468 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 330 | 334 | KKKRR |
2 | 330 | 335 | KKKRRK |
3 | 331 | 335 | KKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00044 | PBM | Transfer from AT3G22760 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.19424s0383.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY099653 | 0.0 | AY099653.1 Arabidopsis thaliana unknown protein (At3g22760) mRNA, complete cds. | |||
GenBank | AY128837 | 0.0 | AY128837.1 Arabidopsis thaliana unknown protein (At3g22760) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006299680.1 | 0.0 | protein tesmin/TSO1-like CXC 3 | ||||
Swissprot | Q8L548 | 0.0 | TCX3_ARATH; Protein tesmin/TSO1-like CXC 3 | ||||
TrEMBL | R0I7X4 | 0.0 | R0I7X4_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.19424s0383.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1467 | 28 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22760.1 | 0.0 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.19424s0383.1.p |
Publications ? help Back to Top | |||
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