PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19424s0375.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HSF
Protein Properties Length: 414aa    MW: 47658.8 Da    PI: 4.722
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19424s0375.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.62.7e-35651572103
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y+++ed+++++++sws+++nsf+v+d++ f+ ++Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+
  Bostr.19424s0375.1.p  65 FLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSITLLPRFFKHNNFSSFVRQLNTYGFRKVNPDR---------WEFANEGFLRGQ 144
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkkse 103
                           k+ll++i+r+k++
  Bostr.19424s0375.1.p 145 KHLLRNIRRRKTS 157
                           **********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.07E-3560154IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.3E-6061154IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.1E-3861154IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.8E-196588IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.0E-3165154IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-19103115IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340104128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-19116128IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MDPSFRFIKE EFPTGFSDSP SPPSSSSSSY LLCSSSMAEA APYDPTTLSY PQPIEGLHES  60
GPPPFLTKTY DLVEDSRTNH VVSWSKSNNS FIVWDPQAFS ITLLPRFFKH NNFSSFVRQL  120
NTYGFRKVNP DRWEFANEGF LRGQKHLLRN IRRRKTSNNS NQVQQPQSSQ QQSLDNFCVE  180
VGSYGLDGEM DSLRRDKQAL MMELVRLRQQ QQNTKMYLTL IEEKLKKTES KQQQMMSFLA  240
RAMQNPDFIQ QLVEQKEKRK EIEEAISKKR QRPIDQGKRK VVNVEDYDDE SGYGNDVAAS  300
ASAFVDMSQE TYGNMSEFEM SELDKLAMHI QGLGDHSTRE EVLNVEKGNE EEEEQNQQQG  360
YQKENKEIYG EGFWEDLLNE GQNFDFEGDQ ENVDVLIEQL GYLGSSSHSL RRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-256015712123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19424s0375.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0459740.0AY045974.1 Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds.
GenBankAY0793740.0AY079374.1 Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010488319.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH80.0HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLR0G5K10.0R0G5K1_9BRAS; Uncharacterized protein
STRINGBostr.19424s0375.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.10.0heat shock transcription factor A6B