PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.19424s0322.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bHLH

Protein Properties

Length: 327aa MW: 36258.3 Da PI: 4.792

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.19424s0322.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.1	3.8e-09	173	220	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RR+++N++f L ++l + + + +K +iL A++ +++L Bostr.19424s0322.1.p 173 TKACREKLRREKLNDRFMDLSSVLEPG---RTPTTDKLAILDDAIRVVNQL 220 6789********************8...8999***********9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.63E-12	161	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.77E-7	167	221	No hit	No description
PROSITE profile	PS50888	12.214	169	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-6	173	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-8	175	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-11	175	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MYPSIYDDDD LLAALCFDQS GGEDPYGYIQ TNEDNIFQDF GSSGVNLQPQ QEQGCNIGEQ 60 FDSFTGNLQQ VCSFRGENNG VVYSSSIGSA QLDLAESLSG VLQQEAHQVY GFRGQNDNSA 120 APHLQQEPGK VCSGVVEISS SSSVRAVKEE LEHVEEECSQ KRRRTGSCSK PGTKACREKL 180 RREKLNDRFM DLSSVLEPGR TPTTDKLAIL DDAIRVVNQL RGEAHELKET NQKLMEEIKS 240 LKAEKNELRE EKLVLKADKE KMEQQLKSMA VPSSGFMPSQ HPAAFHPNKM AVFPSYGYYP 300 NMSMWPYVNP AGRDTSQDLK NNSPVA*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00372	DAP	Transfer from AT3G23210	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.19424s0322.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488573	0.0	AF488573.1 Arabidopsis thaliana clone bHLH034 putative bHLH transcription factor mRNA, complete cds.
GenBank	AY099674	0.0	AY099674.1 Arabidopsis thaliana unknown protein (At3g23210) mRNA, complete cds.
GenBank	AY128853	0.0	AY128853.1 Arabidopsis thaliana unknown protein (At3g23210) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006298151.1	0.0	transcription factor bHLH34
Swissprot	Q9LTC7	0.0	BH034_ARATH; Transcription factor bHLH34
TrEMBL	R0HMW7	0.0	R0HMW7_9BRAS; Uncharacterized protein
STRING	Bostr.19424s0322.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4026	26	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23210.1	1e-165	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bostr.19424s0322.1.p

Publications ? help Back to Top
Li X,Zhang H,Ai Q,Liang G,Yu D Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2478-93 [PMID:26921305] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]