PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.19424s0219.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

G2-like

Protein Properties

Length: 298aa MW: 32424.7 Da PI: 7.1006

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.19424s0219.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.1	9.8e-34	40	94	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Bostr.19424s0219.1.p 40 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRL 94 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.938	37	97	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-32	37	96	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.73E-17	39	95	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.9E-24	40	95	IPR006447	Myb domain, plants
Pfam	PF00249	7.2E-8	42	92	IPR001005	SANT/Myb domain
Pfam	PF14379	2.7E-24	138	187	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010628	Biological Process	positive regulation of gene expression
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MYSAIRSLPL DGGHAGDYHG PLDGTNLPGD ACLVLTTDPK PRLRWTAELH ERFVDAVTQL 60 GGPDKATPKT IMRTMGVKGL TLYHLKSHLQ KFRLGRQACK ESTENSKDAS CVGESQDTGS 120 SSTSSLRMAQ QEQNEGYQVT EALRAQMEVQ RRLHEQLEYG QVQRRLQLRI EAQGKYLQSI 180 LEKACKAFDE QAAAFAGLEA AREELSELAI KVSNVSQGTT VPFFDATKMM MMPSLSELAV 240 AIDNKNNITT NCSVESSLTS VTNGSSISAA SMKKRQRGDI MGVGYEAGWI MPSSTIG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00378	DAP	Transfer from AT3G24120	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.19424s0219.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY050355	0.0	AY050355.1 Arabidopsis thaliana AT3g24120/MUJ8_3 mRNA, complete cds.
GenBank	AY088428	0.0	AY088428.1 Arabidopsis thaliana clone 6626 mRNA, complete sequence.
GenBank	AY094046	0.0	AY094046.1 Arabidopsis thaliana AT3g24120/MUJ8_3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_974356.1	0.0	Homeodomain-like superfamily protein
Swissprot	Q94A57	0.0	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A178VFD1	0.0	A0A178VFD1_ARATH; Uncharacterized protein
STRING	Bostr.19424s0219.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3515	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.2	0.0	G2-like family protein

Link Out ? help Back to Top
Phytozome	Bostr.19424s0219.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]