PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.19424s0179.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Trihelix

Protein Properties

Length: 339aa MW: 39643.5 Da PI: 4.4275

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.19424s0179.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43.7	7.3e-14	95	180	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W +qe +L+e+ ++ +l+r++l+ +W ev++k+ +e +e+s qC+ ++nl+++y+k+k +k +sss++++f++l+ Bostr.19424s0179.1.p 95 WREQEAFVLLEVWGDRFLQLGRRSLRNEDWNEVAEKVsEELRMEKSEAQCRRMIDNLKRKYRKEKIKVEKSGLGSSSKWAFFNKLD 180 ***********************************778899*****************9777766689999*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.3E-20	94	181	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MGDNEDETGY PKKFYSLNRQ NHPMYSRPIP KRHAYYHEEE DEQDEDEVEG KEDEPQGGGY 60 SRGNERFQKR QKPNKPVVSG YDFAGPSDGK VAYDWREQEA FVLLEVWGDR FLQLGRRSLR 120 NEDWNEVAEK VSEELRMEKS EAQCRRMIDN LKRKYRKEKI KVEKSGLGSS SKWAFFNKLD 180 MLLCFSPKSD LGLACGVDSG EFVFMNTKVY LDKSNGFDEM MDSPGDSEEE EDDEDDVDYE 240 RKKFNDTASY KMLADSVERF GKIYEKMEKS KKEQMKELEK MRADFQKDLE LQKKQIVDRV 300 HSEIARLRQE EENHGDGGDD ESEDEEMEND SDVNLSDE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.19424s0179.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB020746	0.0	AB020746.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MOB24.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010488557.1	0.0	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	R0HMM0	0.0	R0HMM0_9BRAS; Uncharacterized protein
STRING	Bostr.19424s0179.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9779	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-160	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Bostr.19424s0179.1.p