PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19424s0169.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HSF
Protein Properties Length: 329aa    MW: 37760.3 Da    PI: 6.2782
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19424s0169.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.61.1e-34191112103
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           F+ k+y++++d++++ li+w    nsf+v+d+ +f++++Lp yFkh+nf+SF+RQLn+YgF+kv+ ++         weF++++F +g+
  Bostr.19424s0169.1.p  19 FIVKTYQMVNDPSTDWLITWGPAHNSFIVVDPLDFSQRILPAYFKHNNFSSFIRQLNTYGFRKVDPDR---------WEFANEHFLRGQ 98 
                           9********************999*****************************************999.........************ PP

                           XXXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkkse 103
                           k+ll++i r+k++
  Bostr.19424s0169.1.p  99 KHLLRNIARRKHA 111
                           **********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.6E-5415108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.2E-3716108IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.26E-3316108IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.5E-181942IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.1E-3019108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-185769IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405882IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-187082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEDDNNNNTN NNNNVIAPFI VKTYQMVNDP STDWLITWGP AHNSFIVVDP LDFSQRILPA  60
YFKHNNFSSF IRQLNTYGFR KVDPDRWEFA NEHFLRGQKH LLRNIARRKH ARGMYGQELD  120
DGEIVREIER LKEEQRELED EIQRMNQRIE ATERRPEQMM AFLYKVVEDP DLLPRMMLEK  180
ERTKKLVSDK KKRRVTMSTV KAETEEVEED EGRVFRVMSS SSPSSMENLY RNHSPENSMG  240
WCVPMTQRQF GNYETGLVAN SMISTSSSST ASSLTSTLSL PESVNRGGGC GSIQGETRYK  300
ETATFGGVVE SNPPTTPPYP FSLFRGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-251610817120Heat shock factor protein 1
5d5u_B2e-251610826129Heat shock factor protein 1
5d5v_B2e-251610826129Heat shock factor protein 1
5d5v_D2e-251610826129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189193KKKRR
2189194KKKRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19424s0169.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ3223820.0HQ322382.1 Arabidopsis thaliana heat shock factor (HSF) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466868.10.0PREDICTED: heat stress transcription factor C-1
SwissprotQ9LV521e-180HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A178VFC51e-177A0A178VFC5_ARATH; HSFC1
TrEMBLG0XQD11e-177G0XQD1_ARATH; Heat shock factor
STRINGBostr.19424s0169.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67752743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-177heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]