PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19424s0082.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family M-type_MADS
Protein Properties Length: 374aa    MW: 43142 Da    PI: 7.0203
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19424s0082.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.58.5e-141151343
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                          +en+  r +++ kRr+g++K  +EL +LC+++v++i+ s++
  Bostr.19424s0082.1.p 11 VENDKSRAISLKKRREGLMKMIKELTILCNIKVCMIMSSPN 51
                          69***********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.161151IPR002100Transcription factor, MADS-box
SMARTSM004328.8E-17160IPR002100Transcription factor, MADS-box
CDDcd002667.80E-25285No hitNo description
SuperFamilySSF554552.75E-19295IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-5323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-131151IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MTRQKVKFAW VENDKSRAIS LKKRREGLMK MIKELTILCN IKVCMIMSSP NEVETMVWPS  60
VEKARYLLDG FFALPEIERK KKETSLESYL KEKTKKVHEQ LMKTHTKNMN YANDQLMVQL  120
HRGCRIHDLN LSEIYQLISF SRDNVILYRK GLDFVQYPPL RDPPMPLSEA QFEEFRTTTN  180
DVFVRGGQKD ERAWKTDEAE KRISNIGTAI KGNQSYYLID QWGFPSPEPP NPRIYQQIER  240
DMASYNKNPN LVPYGNSINE NPNLEMEHAG APVITFHGLA GSVSQPLQHH SMIDNPTMTM  300
SQPSQYPFDF MSREFGVKEE RNTVNNGNSQ FHGKSNTIAI NDGIRKEPPY NETSVGEDND  360
DVTTFDMILN NIF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19424s0082.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889440.11e-168MADS-box protein SVP-like
TrEMBLV4NQI01e-154V4NQI0_EUTSA; Uncharacterized protein
STRINGBostr.19424s0082.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47241446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.11e-127AGAMOUS-like 48