PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.19046s0098.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | LBD | ||||||||
Protein Properties | Length: 259aa MW: 27719.2 Da PI: 8.3943 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 115.1 | 4.4e-36 | 55 | 144 | 1 | 89 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll+++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq e Bostr.19046s0098.1.p 55 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQKE 143 7***********************9989**********************************************************987 PP DUF260 89 q 89 + Bostr.19046s0098.1.p 144 E 144 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.618 | 54 | 156 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.4E-36 | 55 | 145 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MFGDMADQQR AHNTSDSRRK SLAGKRTSQQ TPTSSLSSGG GAMAVATSGT GTTSPCGACK 60 FLRRKCVSGC IFAPHFGSDQ GAARFAAVHK VFGASNVSKL LHHIPVNRRH DAVVTISYEA 120 QARLSDPVYG CVSTILALQQ QKEELITCWF RRLLVDDDVN TVASLQAELS VVQSQLINSR 180 VAMANVMQQQ THHQQQQQLV VMQQPEYSNN SSASTTLAGA AMNSFTVAAE AAAISYDVIA 240 PANLEHPLQP PMPPHQQS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-35 | 46 | 145 | 2 | 100 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-35 | 46 | 145 | 2 | 100 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.19046s0098.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473854 | 1e-163 | AB473854.1 Arabidopsis thaliana ASL21 mRNA for ASYMMETRIC LEAVES2-like 21 protein, complete cds. | |||
GenBank | AK118291 | 1e-163 | AK118291.1 Arabidopsis thaliana At3g03760 mRNA for unknown protein, complete cds, clone: RAFL19-58-F13. | |||
GenBank | ATAC009540 | 1e-163 | AC009540.6 Arabidopsis thaliana chromosome III BAC F20H23 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 1e-163 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002882305.1 | 1e-133 | LOB domain-containing protein 20 | ||||
Swissprot | Q9SRV3 | 1e-129 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | D7L194 | 1e-131 | D7L194_ARALL; LOB domain protein 20 | ||||
STRING | Bostr.19046s0098.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 1e-112 | LOB domain-containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.19046s0098.1.p |