PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.19046s0037.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 703aa MW: 78781.8 Da PI: 6.1835 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61 | 1.8e-19 | 29 | 79 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t++q+++Le++F+++++p++++r++L ++l+L+ +q+k+WFqN+R++ k Bostr.19046s0037.1.p 29 RHTPQQIQRLEAYFKECPHPDESQRQQLCQELKLEADQIKFWFQNKRTQSK 79 689*********************************************988 PP | |||||||
2 | START | 115.3 | 8.7e-37 | 218 | 438 | 3 | 206 |
HHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS START 3 aeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla... 77 a +a +el ++ l ee++Wvkss +se +++ + ++ + ++e +++ +vv+ ++++l e +ld+ +W+e ++ Bostr.19046s0037.1.p 218 AASAVEELKRLFLTEEQFWVKSSidgtymiDSESYEKFSYAVKH--FrstsAHVESSKDGTVVPTEATNLIEMFLDSE-KWKELFPtiv 303 667889999999***********999888866666666666633..255778**************************.******9999 PP .EEEEEEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEE CS START 78 .kaetlevissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepk 157 ka+t+ v+ ++lq+ +l lsplvp R+f++vR++++ +g w+i+dvS +++ + ++s+ ++pSg+li+++ Bostr.19046s0037.1.p 304 nKAKTIHVLGLElpirencNVLQVLWEQLHILSPLVPpREFMIVRCCQEIDKGLWIIADVSHSVNFDFV-NASC---YKRPSGCLIQTL 388 9********999999999********************************************9998888.4555...559********* PP CTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 158 snghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 +n hskv w+ehv+++ +l h ++r l++ g gak+w tl+r ce+ Bostr.19046s0037.1.p 389 PNAHSKVMWIEHVEVDHKLDtHKIYRELLSGGSGYGAKRWIVTLKRMCER 438 *******************99***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.3E-19 | 10 | 82 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.38E-17 | 11 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.742 | 21 | 81 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.3E-15 | 23 | 85 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.47E-15 | 28 | 81 | No hit | No description |
Pfam | PF00046 | 4.6E-17 | 29 | 79 | IPR001356 | Homeobox domain |
PROSITE profile | PS50848 | 39.256 | 207 | 441 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.97E-26 | 209 | 439 | No hit | No description |
CDD | cd08875 | 4.25E-88 | 212 | 437 | No hit | No description |
SMART | SM00234 | 2.7E-20 | 216 | 438 | IPR002913 | START domain |
Pfam | PF01852 | 1.6E-30 | 218 | 438 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 4.5E-5 | 273 | 408 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 8.93E-9 | 458 | 667 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 703 aa Download sequence Send to blast |
MDNDGGGSSG NEQYTSEDAK QNGKKICHRH TPQQIQRLEA YFKECPHPDE SQRQQLCQEL 60 KLEADQIKFW FQNKRTQSKA QDERCTNILL RGENENLQSE NEAMLEALNN VICPACGGPP 120 FGREEREHNL QKLRLENARL KEQRDKISNF VSKHMSKRPI VGDSLASVPS QQIFDHLSYG 180 SNPSNIFEPS SSLGPPTSQT IQPQPLSQMD ISLLSETAAS AVEELKRLFL TEEQFWVKSS 240 IDGTYMIDSE SYEKFSYAVK HFRSTSAHVE SSKDGTVVPT EATNLIEMFL DSEKWKELFP 300 TIVNKAKTIH VLGLELPIRE NCNVLQVLWE QLHILSPLVP PREFMIVRCC QEIDKGLWII 360 ADVSHSVNFD FVNASCYKRP SGCLIQTLPN AHSKVMWIEH VEVDHKLDTH KIYRELLSGG 420 SGYGAKRWIV TLKRMCERMA LSSIPTLPAS DWSEVITTGE GRRSVMKLGE RMLKNFNEML 480 TMSGKVDFPQ QSKCGVRVSI RMNLEAGQPP GFVVSAASSL SIPLTPLQVF IFLRNLDTRQ 540 QWDVLSYGTV VSEIARIATG SSETNCLTIL RVHPTQEENN DKLMARDSDK EDMLMLQDCY 600 MDALGGMIVY APMDMATMKI AVSGEVDPSH IPILPSGFII SSDGRRSTAE DGGTLLTVAF 660 QILISGKTTR SREVNERSVD TVSALISSTV QRIKGLLNCP QC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.19046s0037.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117867 | 0.0 | AK117867.1 Arabidopsis thaliana At3g03260 mRNA for unknown protein, complete cds, clone: RAFL19-04-D14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020886110.1 | 0.0 | homeobox-leucine zipper protein HDG8 isoform X1 | ||||
Swissprot | Q9M9P4 | 0.0 | HDG8_ARATH; Homeobox-leucine zipper protein HDG8 | ||||
TrEMBL | A0A178VGS8 | 0.0 | A0A178VGS8_ARATH; HDG8 | ||||
STRING | Bostr.19046s0037.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12791 | 15 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03260.1 | 0.0 | homeodomain GLABROUS 8 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.19046s0037.1.p |