PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.19046s0031.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

NAC

Protein Properties

Length: 480aa MW: 55482.5 Da PI: 5.1453

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.19046s0031.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.9	1.1e-54	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhPtdeel+++yLk+k++g ++el evi+evd+yk+ePwdLp k + ++++ewyfFs+rd+ky++g+r+nratk gyWkatg Bostr.19046s0031.1.p 6 LPPGFRFHPTDEELITYYLKRKINGLEIEL-EVIAEVDLYKCEPWDLPgKsLLPSKDQEWYFFSPRDRKYPNGSRTNRATKGGYWKATG 93 79**************************.99***********6345667999*************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 kd++v +++++g+kktLv+y+grap+g +t Wvmheyrl Bostr.19046s0031.1.p 94 KDRRVSW-RDRAIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 133 **9.8899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.67E-63	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	61.097	6	157	IPR003441	NAC domain
Pfam	PF02365	7.1E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0090602	Biological Process	sieve element enucleation
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELI TYYLKRKING LEIELEVIAE VDLYKCEPWD LPGKSLLPSK 60 DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRAIGTKKT LVYYRGRAPH 120 GIRTGWVMHE YRLDESECEP SAYGMQDAYA LCRVFKKIVI EAKPRDQHRS FVHAMSNVSG 180 NCSSSFDTCS ALEISSTTHQ VQNTFQPRFG NERFNSNAIS NDDWSQYYGS SYRPFPTPYK 240 INTEIECSML QHNISLPPLR VENSAVSDCD FFTSMTHNNN HGVLDDFTFA ESNSNHYNSV 300 GDQVINVGNY DEQLITSNHH MHQAGYIEEQ KIISSLDDTD QELGFQGNNT NNNIDIDDFF 360 SFDIYNEENV NRIEDNEDVN TNETLDSSGF EVVEEETIFN NQMLISTYQT TKILYHQVVP 420 SHTLKVHVNP MNHNVEDRTL FIEEDKDSWL QRAEKITKTR LTLFSLMAQQ YYKCLAIFF*

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELI TYYLKRKING LEIELEVIAE VDLYKCEPWD LPGKSLLPSK  60
DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRAIGTKKT LVYYRGRAPH  120
GIRTGWVMHE YRLDESECEP SAYGMQDAYA LCRVFKKIVI EAKPRDQHRS FVHAMSNVSG  180
NCSSSFDTCS ALEISSTTHQ VQNTFQPRFG NERFNSNAIS NDDWSQYYGS SYRPFPTPYK  240
INTEIECSML QHNISLPPLR VENSAVSDCD FFTSMTHNNN HGVLDDFTFA ESNSNHYNSV  300
GDQVINVGNY DEQLITSNHH MHQAGYIEEQ KIISSLDDTD QELGFQGNNT NNNIDIDDFF  360
SFDIYNEENV NRIEDNEDVN TNETLDSSGF EVVEEETIFN NQMLISTYQT TKILYHQVVP  420
SHTLKVHVNP MNHNVEDRTL FIEEDKDSWL QRAEKITKTR LTLFSLMAQQ YYKCLAIFF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-55	4	157	18	168	NAC domain-containing protein 19
3swm_B	2e-55	4	157	18	168	NAC domain-containing protein 19
3swm_C	2e-55	4	157	18	168	NAC domain-containing protein 19
3swm_D	2e-55	4	157	18	168	NAC domain-containing protein 19
3swp_A	2e-55	4	157	18	168	NAC domain-containing protein 19
3swp_B	2e-55	4	157	18	168	NAC domain-containing protein 19
3swp_C	2e-55	4	157	18	168	NAC domain-containing protein 19
3swp_D	2e-55	4	157	18	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00329	DAP	Transfer from AT3G03200	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.19046s0031.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT030461	0.0	BT030461.1 Arabidopsis thaliana At3g03200 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_186970.2	0.0	NAC domain containing protein 45
Swissprot	A4VCM0	0.0	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	A0A178VIZ2	0.0	A0A178VIZ2_ARATH; NAC045
STRING	Bostr.19046s0031.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4411	18	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03200.1	0.0	NAC domain containing protein 45

Link Out ? help Back to Top
Phytozome	Bostr.19046s0031.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]