PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.18473s0331.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | MYB_related | ||||||||
Protein Properties | Length: 176aa MW: 19946.2 Da PI: 8.8131 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.1 | 7.4e-17 | 2 | 43 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++ Bostr.18473s0331.3.p 2 TPQEERLVLELHAKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 43 9*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.372 | 1 | 47 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-12 | 1 | 45 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.79E-12 | 1 | 43 | No hit | No description |
SuperFamily | SSF46689 | 5.23E-13 | 2 | 48 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.7E-15 | 2 | 42 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 2 | 44 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MTPQEERLVL ELHAKWGNRW SKIARKLPGR TDNEIKNYWR THMRKKTQEK KRHVSPTSSF 60 SNCSSSSMTT TTTNTQDTSC HSRKSSGKVS FYDTGGSRST GGMMNQETED AYSLDDIWRE 120 IDHSAVNIIK PVKDIYSEQS HCLSYPSLAS PTWESSLDSI WNMDADKITA MTLKS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.18473s0331.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF272733 | 0.0 | AF272733.1 Arabidopsis thaliana putative transcription factor (MYB48) mRNA, complete cds. | |||
GenBank | AK176475 | 0.0 | AK176475.1 Arabidopsis thaliana mRNA for Myb DNA binding protein -like, complete cds, clone: RAFL24-27-H12. | |||
GenBank | AY519594 | 0.0 | AY519594.1 Arabidopsis thaliana MYB transcription factor (At3g46130) mRNA, complete cds. | |||
GenBank | DQ075255 | 0.0 | DQ075255.1 Arabidopsis thaliana MYB transcription factor MYB48-1 (At3g46130) mRNA, complete cds, alternatively spliced. | |||
GenBank | DQ075256 | 0.0 | DQ075256.1 Arabidopsis thaliana MYB transcription factor MYB48-2 (At3g46130) mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010426040.1 | 2e-97 | PREDICTED: transcription factor MYB48 isoform X1 | ||||
Swissprot | Q9LX82 | 2e-93 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | D7LMV9 | 9e-96 | D7LMV9_ARALL; Uncharacterized protein | ||||
STRING | Bostr.18473s0331.1.p | 1e-121 | (Boechera stricta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.2 | 9e-89 | myb domain protein 48 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.18473s0331.3.p |
Publications ? help Back to Top | |||
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