PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.18473s0299.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GRAS
Protein Properties Length: 597aa    MW: 67704.5 Da    PI: 5.7325
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.18473s0299.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS396.33.2e-1212225921374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           +++lL++cA+av+s d+++a + +++++e++s++gd++qRl  +++eAL+ar+++   ++   + + ++s++++++ l+a+k f++++P
  Bostr.18473s0299.1.p 222 MRNLLMQCAQAVASFDQRRAAEKIKEIREHSSSHGDATQRLGYHLAEALEARITG---TMTTPI-SATSSRTSMVDILKAYKGFVQACP 306
                           579****************************************************...333223.333334569*************** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                           +l ++++taN++I e +++++++HiiDf+i +G+QWp+L+qaL++ ++gpp lR+Tg++ p+sg   +e++eetg+rL++f+++++vpf
  Bostr.18473s0299.1.p 307 TLIMCYFTANRTIIELASKATTLHIIDFGILYGFQWPCLIQALSNLEGGPPLLRVTGIELPQSGfrPSERVEETGRRLKRFCDKFKVPF 395
                           ***************************************************************9************************* PP

                  GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                           e+n+ +ak++e+++l+eL +++gE+++Vn++l+l++++de+vsl+s+rd+ Lkl+++++P+++v++e +  +ns+ Fl+rf eal ++s
  Bostr.18473s0299.1.p 396 EYNF-IAKNWENITLDELVINSGETTVVNCILRLQYTPDETVSLNSPRDTALKLFRDINPDLFVFAEINGTYNSPFFLTRFKEALFHCS 483
                           ****.7*********************************************************************************** PP

                  GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                           +lfd++e++l+++++ r+ vErel+ r++++v+aceg+er++r et+++W+ r+ +aGFkp++l++++ k+ k ++++ + + + ++++
  Bostr.18473s0299.1.p 484 SLFDMYETTLAEDDDCRTLVERELIIRDAMSVIACEGSERFARPETYKQWQVRILRAGFKPAKLNKQIIKDGKEIVKQRYHKDFVIDND 572
                           ********************************************************************************888****** PP

                  GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                           ++++++gWk+r L++vS+W+
  Bostr.18473s0299.1.p 573 NHWMFQGWKGRVLYAVSCWK 592
                           *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.944196572IPR005202Transcription factor GRAS
PfamPF035141.1E-118222592IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MDAILQVPVD GFKFDNGSGS CCKPRNNLES GTTNRFTCFN ESESRSDPSP TESKVCSDYR  60
PVFKYINDML MEEDLEGQPC MLVDSLALHA AERSFYEVLQ DQSPPPSDQI SGDLEEGSLG  120
NFSSITSLHQ PTSDFNRSPE VSEESTRRYR HRDDDEDDDL ESARKSKLPA ISTVDELAVK  180
FEEVLLVCQK NDHGEASPNK TGRTKSSSNR SKQQKSNQPV DMRNLLMQCA QAVASFDQRR  240
AAEKIKEIRE HSSSHGDATQ RLGYHLAEAL EARITGTMTT PISATSSRTS MVDILKAYKG  300
FVQACPTLIM CYFTANRTII ELASKATTLH IIDFGILYGF QWPCLIQALS NLEGGPPLLR  360
VTGIELPQSG FRPSERVEET GRRLKRFCDK FKVPFEYNFI AKNWENITLD ELVINSGETT  420
VVNCILRLQY TPDETVSLNS PRDTALKLFR DINPDLFVFA EINGTYNSPF FLTRFKEALF  480
HCSSLFDMYE TTLAEDDDCR TLVERELIIR DAMSVIACEG SERFARPETY KQWQVRILRA  540
GFKPAKLNKQ IIKDGKEIVK QRYHKDFVID NDNHWMFQGW KGRVLYAVSC WKPAKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-422265928375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.18473s0299.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2264190.0AK226419.1 Arabidopsis thaliana mRNA for scarecrow-like protein, complete cds, clone: RAFL06-09-N12.
GenBankAL1333140.0AL133314.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F12A12.
GenBankAY0874180.0AY087418.1 Arabidopsis thaliana clone 35201 mRNA, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875794.10.0scarecrow-like protein 30 isoform X1
SwissprotQ9SNB80.0SCL30_ARATH; Scarecrow-like protein 30
TrEMBLD7LN250.0D7LN25_ARALL; Scarecrow transcription factor family protein
STRINGBostr.18473s0299.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]