PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.18473s0221.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Dof

Protein Properties

Length: 452aa MW: 49836.3 Da PI: 6.9793

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.18473s0221.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.1	1.1e-39	112	172	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+ss Bostr.18473s0221.1.p 112 PTKILPCPRCKSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKSSS 172 67899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	109	169	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.1E-32	114	170	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.649	116	170	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	118	154	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MMMESRNPAI KLFGMKIPFP AVFESAVTVD EEEEDEWSGG DGGEDKSEDK VTPVLSDKNN 60 KNCNEDSLNN SNESKPETGD KEETTSTDQI ESSDSPEDNQ QTTADGKTLK KPTKILPCPR 120 CKSMDTKFCY YNNYNINQPR HFCKACQRYW TAGGTMRNVP VGAGRRKNKS SSSHYRHITI 180 SEALEAARLD PGLQANTRVL SFGLDAPQQH AAPMTPLMKL QGNQKVSNGV QNGFHGVADQ 240 RFVARVENGD DCSSGSSATT SNNHSVDESR AQSCRVVEPQ MNNNNSMNGY ACIPGVPWPY 300 TWNPAMPPPG FYPPPGYPMP FYPYWTIPML SPHQTPSPIS QKGSNPNSPT LGKHSRDEES 360 ARKDNETEQK QRNGYVLVPK TLRIDDPNEA AKSSIWTTLG IKNEAMSKGG GMFKGFDKKT 420 KMNNNDKAEN SPVLSANPAA LSRSLNFHER I*

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MMMESRNPAI KLFGMKIPFP AVFESAVTVD EEEEDEWSGG DGGEDKSEDK VTPVLSDKNN  60
KNCNEDSLNN SNESKPETGD KEETTSTDQI ESSDSPEDNQ QTTADGKTLK KPTKILPCPR  120
CKSMDTKFCY YNNYNINQPR HFCKACQRYW TAGGTMRNVP VGAGRRKNKS SSSHYRHITI  180
SEALEAARLD PGLQANTRVL SFGLDAPQQH AAPMTPLMKL QGNQKVSNGV QNGFHGVADQ  240
RFVARVENGD DCSSGSSATT SNNHSVDESR AQSCRVVEPQ MNNNNSMNGY ACIPGVPWPY  300
TWNPAMPPPG FYPPPGYPMP FYPYWTIPML SPHQTPSPIS QKGSNPNSPT LGKHSRDEES  360
ARKDNETEQK QRNGYVLVPK TLRIDDPNEA AKSSIWTTLG IKNEAMSKGG GMFKGFDKKT  420
KMNNNDKAEN SPVLSANPAA LSRSLNFHER I*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.18473s0221.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY084628	0.0	AY084628.1 Arabidopsis thaliana clone 113639 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002877565.1	0.0	cyclic dof factor 3
Swissprot	Q8LFV3	0.0	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	D7LNE3	0.0	D7LNE3_ARALL; Predicted protein
STRING	Bostr.18473s0221.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5441	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	0.0	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Bostr.18473s0221.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]