PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.18473s0195.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family TCP
Protein Properties Length: 496aa    MW: 52773.3 Da    PI: 7.1638
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.18473s0195.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP134.21.1e-411122902134
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................... 65 
                           + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt                         
  Bostr.18473s0195.1.p 112 PLKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTgtipanftslnislrssgssmslps 200
                           57999***********************************************************6666666666666666666665555 PP

                   TCP  66 .......ssssaseceaesssssasnsssg............kaaksaa.kskksqksaasalnlakesrakararare.rtrekmrik 133
                                  ++s+++ +++++ ++++++++ g            +a +s+  ++ ++ ++++s+ln+++ ++++ +++++e ++++k r++
  Bostr.18473s0195.1.p 201 hfrsaasTFSPNNIFSPAMLQQQQQQQRGGggyhhhhphlqgRATTSSLfPGIDNFTPTTSFLNFHNPTKQEGDQDSEElSSEKKRRLQ 289
                           555555444444444555555555544444899999999999888888889*************************9996666666655 PP

                   TCP 134 n 134
                           +
  Bostr.18473s0195.1.p 290 T 290
                           4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-40117291IPR005333Transcription factor, TCP
PROSITE profilePS5136927.505118172IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010029Biological Processregulation of seed germination
GO:0010229Biological Processinflorescence development
GO:0031347Biological Processregulation of defense response
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MQKPTSSILN VIMDGGDNVG GGGGGDDHHR HLHHQHRPTF PFQLLGKRDP DDNHQQQQPS  60
PSSSSSLFSL HQHQQLSQSQ PQPQKPQPQT TQKELLQTQE ESAAVVAAKK PPLKRASTKD  120
RHTKVDGRGR RIRMPALCAA RVFQLTRELG HKSDGETIEW LLQQAEPSVI AATGTGTIPA  180
NFTSLNISLR SSGSSMSLPS HFRSAASTFS PNNIFSPAML QQQQQQQRGG GGYHHHHPHL  240
QGRATTSSLF PGIDNFTPTT SFLNFHNPTK QEGDQDSEEL SSEKKRRLQT TSDLQLQHHH  300
DQIGSYTLQS SNSGSTATAA ATQQIPGNFW MVAAAAAAVG GGGNNNQTGG LMTASVGSGG  360
GSGGGGEPVW TFPSINTAAA ALYRSGVSGV SGGAVSSGLH FMNFAAPMAF LTGQQQLATT  420
SNHEINEDNN NDNEGGGGRS DGGGDHHNTQ RHHHHHQQHH HHNILSGLNQ YGRQVSGESQ  480
ASGSLGGGDD EDPQD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1436443GGRSDGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00396DAPTransfer from AT3G47620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.18473s0195.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329550.0AL132955.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F1P2.
GenBankAY0588740.0AY058874.1 Arabidopsis thaliana AT3g47620/F1P2_170 mRNA, complete cds.
GenBankAY1033040.0AY103304.1 Arabidopsis thaliana AT3g47620/F1P2_170 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_190346.20.0TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14
SwissprotQ93Z000.0TCP14_ARATH; Transcription factor TCP14
TrEMBLA0A178V7160.0A0A178V716_ARATH; TCP14
STRINGBostr.18473s0195.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39152757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.11e-146TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14
Publications ? help Back to Top
  1. Steiner E, et al.
    The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin.
    Plant Physiol., 2016. 171(2): p. 1485-94
    [PMID:27208284]
  2. Yang L, et al.
    Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.
    Cell Host Microbe, 2017. 21(2): p. 156-168
    [PMID:28132837]
  3. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]