PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.18473s0137.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | E2F/DP | ||||||||
Protein Properties | Length: 346aa MW: 39115.5 Da PI: 8.7669 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 49.7 | 6e-16 | 2 | 43 | 25 | 71 |
E2F_TDP 25 vtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 + l+++a++L v +rRRiYDi+NVLe+++++++++kn+++wkg Bostr.18473s0137.2.p 2 IGLDDAASKL---GV--ERRRIYDIVNVLESVGVLTRRAKNQYTWKG 43 789*******...9*..****************************98 PP | |||||||
2 | E2F_TDP | 80.1 | 1.9e-25 | 113 | 193 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 r+eksL+lltq+f+kl+ +se++i++l+e+ak L+ + +++k+RR+YDi+NVL+++nliek ++k++++w g Bostr.18473s0137.2.p 113 RREKSLGLLTQNFIKLFVCSEARIISLDEAAKLLLGDahntsIMRTKVRRLYDIANVLSSMNLIEKthtldSRKPAFKWLG 193 689**************************************999************************9999*******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01372 | 2.0E-6 | 1 | 43 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.7E-16 | 1 | 44 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.36E-11 | 2 | 44 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 6.2E-14 | 2 | 43 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.8E-23 | 110 | 194 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.2E-32 | 113 | 193 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.81E-14 | 115 | 194 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 2.6E-20 | 115 | 193 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032876 | Biological Process | negative regulation of DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MIGLDDAASK LGVERRRIYD IVNVLESVGV LTRRAKNQYT WKGFAAIPGA LKELQEEGVK 60 DTFHRFYVNE NVKGSDDEDD DEESSQPHSS SQADSSKPGS LPHSSDSSKI DNRREKSLGL 120 LTQNFIKLFV CSEARIISLD EAAKLLLGDA HNTSIMRTKV RRLYDIANVL SSMNLIEKTH 180 TLDSRKPAFK WLGYNGEPTF TLSSDLMQME SRKRAFGTDL TNVNIKRSKS SSSSQENATE 240 RRLKMKKNTT PESSYYKSFD VHESRHGSRG YQFGPFAPGS GTYPTAAMED NSRRAFDVEN 300 LVSDYHPSYQ NQVLKDLFSH YMDAWKTWYS EVTQKNPLPN TSQHR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 8e-34 | 2 | 185 | 32 | 228 | Transcription factor E2F8 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00397 | DAP | Transfer from AT3G48160 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.18473s0137.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB074533 | 0.0 | AB074533.1 Arabidopsis thaliana mRNA for E2F-like repressor E2L3, complete cds. | |||
GenBank | BT004258 | 0.0 | BT004258.1 Arabidopsis thaliana clone RAFL15-19-A14 (R20743) putative DP-E2F protein 1 (At3g48160) mRNA, complete cds. | |||
GenBank | BT005524 | 0.0 | BT005524.1 Arabidopsis thaliana clone U20743 putative DP-E2F protein 1 (At3g48160) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020880368.1 | 0.0 | E2F transcription factor-like E2FE isoform X1 | ||||
Swissprot | Q8LSZ4 | 0.0 | E2FE_ARATH; E2F transcription factor-like E2FE | ||||
TrEMBL | D7LRJ4 | 0.0 | D7LRJ4_ARALL; Uncharacterized protein | ||||
STRING | Bostr.18473s0137.1.p | 0.0 | (Boechera stricta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.2 | 0.0 | DP-E2F-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.18473s0137.2.p |
Publications ? help Back to Top | |||
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