PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.18473s0106.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 438aa    MW: 48754.8 Da    PI: 5.0158
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.18473s0106.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.71.9e-13103126326
                           S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                            e C+f++rtG Ck+G++CkF+H+
  Bostr.18473s0106.1.p 103 AEDCSFYMRTGSCKFGSTCKFNHP 126
                           689********************9 PP
2zf-CCCH31.62.8e-10153173525
                           --SGGGGTS--TTTTT-SS-S CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                            C++f+rtG CkyG++C+F+H
  Bostr.18473s0106.1.p 153 DCKYFFRTGGCKYGETCRFNH 173
                           5******************** PP
3zf-CCCH406.4e-13197220326
                           S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                           +++C++++r+G Ck+G+ CkF+H+
  Bostr.18473s0106.1.p 197 EVECPYYMRNGSCKFGAECKFNHP 220
                           789********************9 PP
4zf-CCCH17.57.2e-06337362227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++C+++ +tG Ck+  +Ck++H++
  Bostr.18473s0106.1.p 337 DQPECSYYIKTGDCKFKFSCKYHHPK 362
                           689*********************96 PP
5zf-CCCH27.17.4e-09384407326
                           S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                           + +C +++ +G+Ck+G+ C+F H+
  Bostr.18473s0106.1.p 384 QNICTHYSWYGICKFGPACRFDHS 407
                           679********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.507100128IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-7100127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6102128IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-11103126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-5106125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.798148176IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-4148175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5151176IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-8153173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-6154174IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6194221IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3194222IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-5195222IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-10197220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4200219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.587335363IPR000571Zinc finger, CCCH-type
SMARTSM003561.2335362IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-5339365IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6379407IPR000571Zinc finger, CCCH-type
SMARTSM003560.022381408IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892381409IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-6384407IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MVNSEEIADG FEPKLVSRSY SGDSSADRSL SDLNLAAEDL SDQFKNVDLN EVTNEQSETM  60
MSVSENNGGL DSYAVDTNQE EEEDGDGDVW SENESVYPVR PGAEDCSFYM RTGSCKFGST  120
CKFNHPLPRK IQIARDNKMR EKEEDGDKLR LIDCKYFFRT GGCKYGETCR FNHTKPKSCL  180
ASVPELNFLG LPIRPEEVEC PYYMRNGSCK FGAECKFNHP DPTTTGGTDS PSFHGNNGVS  240
IGSFSPKSTF QASSTSWFSP RHANCTTPFI PVMLSQTHGV PSQTPEWNGY QASVYSSERG  300
VFSPSTTYLV NSSSAETSML SQYHHQMPAE EFPERPDQPE CSYYIKTGDC KFKFSCKYHH  360
PKNRLPKLPP YALNDKGLPL RPDQNICTHY SWYGICKFGP ACRFDHSIQP PYSTGSSLVV  420
VEPPQVGANG NESDGWN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.18473s0106.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0331390.0BT033139.1 Arabidopsis thaliana unknown protein (At3g48440) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_190414.10.0Zinc finger C-x8-C-x5-C-x3-H type family protein
SwissprotQ9STM40.0C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLD7LRW70.0D7LRW7_ARALL; Zinc finger (CCCH-type) family protein
STRINGBostr.18473s0106.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]