PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.18351s0321.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GRAS
Protein Properties Length: 508aa    MW: 56304.9 Da    PI: 5.0533
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.18351s0321.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS307.43.4e-941385062374
                  GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           ve L++++++v+s++l+laq +L+rl+++ +sp+g+p+qR+a+yf+eAL + l++     ++  + + +s+++ ++++ a k fs +sP
  Bostr.18351s0321.1.p 138 VEDLIRVVDCVDSDELQLAQVILSRLNQRlRSPAGRPLQRAAFYFKEALGSLLTG-----SNRNQNRLSSWSEIVQKIRAIKEFSGISP 221
                           688*************************99*************************.....7788899999999**************** PP

                  GRAS  90 ilkfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeel 172
                           i+ fsh+taNqaIl++++ +        H++Df+i+ G+Q+++L++a+ +++ +g   lR+T+v+   ++s+ e++ ++e+La+fA+ l
  Bostr.18351s0321.1.p 222 IPLFSHFTANQAILDSLSWQqqsspPFAHVVDFEIGFGGQYASLMRAIVEKSvNGIGFLRVTAVVT--EDSAVETRLVKENLAQFAADL 308
                           ****************998844444456************************99999*********..459****************** PP

                  GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerfl 258
                           +++f++++++++++e l+++++r+ +gE+++V l+  ++r l       + ++ +++ ++++sPkvvv+v++e  +   +++sF ++f+
  Bostr.18351s0321.1.p 309 KIRFQIEFVLMRTFEILSFKAIRFAEGEKTVVLLSPVIFRRL-------NGISGFVNDLRRVSPKVVVFVDSEgwTGIsGAGSFQREFV 390
                           *****************************************9.......33567*******************553445888******* PP

                  GRAS 259 ealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                           + le+y+++f+sl+a ++        ++ +E+++++++i ++v ++ ++   r  ++++Wre++ +aG++ +pls+++  qa++l++k 
  Bostr.18351s0321.1.p 391 SGLEFYTMVFESLDAAVAFPGsgdLVKKIIEAFVMRPKIASAVEAAANK---RGGEMMTWREAFCAAGMSIIPLSQFVDIQAECLVEKA 476
                           *************8776533224488999***************99998...888899******************************* PP

                  GRAS 345 ksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                           +++g++v +++g+lvl+W++rpLv++SaWr
  Bostr.18351s0321.1.p 477 QVRGFHVAQRQGELVLCWHERPLVATSAWR 506
                           *****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.753111486IPR005202Transcription factor GRAS
PfamPF035141.2E-91138506IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MRVPASSDTT NNSNSNLVGY NEPTSVLDLR RSPSPATAEE KPVIVTAAEV NNGDNQFPLD  60
DHVMRSMDWD SIMKELELDE DSTPNLKSNF STSAISPHFA AVDPHLPGFP DQLHPPDFRS  120
SDVYYGFDNN NEAGFDFVED LIRVVDCVDS DELQLAQVIL SRLNQRLRSP AGRPLQRAAF  180
YFKEALGSLL TGSNRNQNRL SSWSEIVQKI RAIKEFSGIS PIPLFSHFTA NQAILDSLSW  240
QQQSSPPFAH VVDFEIGFGG QYASLMRAIV EKSVNGIGFL RVTAVVTEDS AVETRLVKEN  300
LAQFAADLKI RFQIEFVLMR TFEILSFKAI RFAEGEKTVV LLSPVIFRRL NGISGFVNDL  360
RRVSPKVVVF VDSEGWTGIS GAGSFQREFV SGLEFYTMVF ESLDAAVAFP GSGDLVKKII  420
EAFVMRPKIA SAVEAAANKR GGEMMTWREA FCAAGMSIIP LSQFVDIQAE CLVEKAQVRG  480
FHVAQRQGEL VLCWHERPLV ATSAWRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-2612950511378Protein SCARECROW
5b3h_A4e-2612950510377Protein SCARECROW
5b3h_D4e-2612950510377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.18351s0321.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409136.10.0scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A1J3DDU30.0A0A1J3DDU3_NOCCA; Scarecrow-like protein 15 (Fragment)
STRINGBostr.18351s0321.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]