PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.18351s0307.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GATA
Protein Properties Length: 207aa    MW: 22762.6 Da    PI: 7.9293
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.18351s0307.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.97.9e-2094128135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C++C tt+TplWR+gp g+k+LCnaCG++++k+++
  Bostr.18351s0307.1.p  94 CASCDTTSTPLWRNGPKGPKSLCNACGIRFKKEER 128
                           ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.71E-1388129No hitNo description
PROSITE profilePS5011413.45588124IPR000679Zinc finger, GATA-type
SMARTSM004019.1E-2088140IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-1692128IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.44E-1393125No hitNo description
PfamPF003201.8E-1794128IPR000679Zinc finger, GATA-type
PROSITE patternPS00344094119IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MMGYRTNPNF SMFFSSENDD QNHHNYDPYN NLSSSTSVDC TLSLGTPSTR LDDHRRFSSA  60
SSNNISGDFY FHGGNAKTTS YKKGGGDHSL PRRCASCDTT STPLWRNGPK GPKSLCNACG  120
IRFKKEERRA TARNLTVSGG GSSAAEIPVE NPYNGGGNYY NHHHYASSSP SWPHQNTQRV  180
PYFSPAAETE YPYVDDVTAA SFMSWN*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.18351s0307.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0295050.0BT029505.1 Arabidopsis thaliana At2g18380 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002886168.11e-142GATA transcription factor 20
SwissprotQ9ZPX01e-127GAT20_ARATH; GATA transcription factor 20
TrEMBLD7LBB61e-141D7LBB6_ARALL; Predicted protein
STRINGBostr.18351s0307.1.p1e-153(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61591746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.11e-124GATA transcription factor 20
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]