PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.18351s0300.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 83aa    MW: 9452.39 Da    PI: 9.8473
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.18351s0300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.91.5e-101559345
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                          +WT+  d+++  a +++ ++   +W  +ar +g g++++++k ++ 
  Bostr.18351s0300.1.p 15 SWTAKQDKQFEMALAKYDKDtpdRWQNVARAVG-GKSAEEVKRHYE 59
                          7********************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.1661166IPR017884SANT domain
SMARTSM007171.6E-91264IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-131470IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-51568IPR009057Homeodomain-like
PfamPF002492.0E-81559IPR001005SANT/Myb domain
CDDcd001671.87E-71662No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MASNSISTSR SSNSSWTAKQ DKQFEMALAK YDKDTPDRWQ NVARAVGGKS AEEVKRHYEL  60
LIRDVNDIES GRYPQPRYRN TN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-29682177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.18351s0300.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0064392e-84AC006439.4 Arabidopsis thaliana chromosome 2 clone T30D6 map mi39, complete sequence.
GenBankCP0026852e-84CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankDQ4876602e-84DQ487660.1 Arabidopsis thaliana clone 0000013653_0000009781 unknown protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024016149.19e-55protein RADIALIS-like 4
SwissprotQ1G3C41e-39RADL4_ARATH; Protein RADIALIS-like 4
TrEMBLV4M3571e-53V4M357_EUTSA; Uncharacterized protein
STRINGBostr.18351s0300.1.p6e-55(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18328.13e-41RAD-like 4