PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.18351s0273.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 366aa MW: 42421.7 Da PI: 5.2411 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 175.7 | 1.3e-54 | 9 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 +ppGfrFhPtdeelv +yL+kk++++k++l +vi+++d+y++ePwdL++ ++e++ewyf+s++dkky+tg+r+nrat +g+Wkat Bostr.18351s0273.1.p 9 VPPGFRFHPTDEELVGYYLRKKIASQKIDL-DVIRDIDLYRIEPWDLQErcrIGYEEQNEWYFYSHKDKKYPTGTRTNRATMAGFWKAT 96 69****************************.9***************953432233667****************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 g+dk+v++ k++l+g++ktLvfykgrap+g+k+dW+mheyrle Bostr.18351s0273.1.p 97 GRDKSVYD-KTKLIGMRKTLVFYKGRAPNGKKSDWIMHEYRLE 138 ********.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-60 | 3 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.756 | 9 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.7E-28 | 10 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0048759 | Biological Process | xylem vessel member cell differentiation | ||||
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis | ||||
GO:1990110 | Biological Process | callus formation | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MESMESCSVP PGFRFHPTDE ELVGYYLRKK IASQKIDLDV IRDIDLYRIE PWDLQERCRI 60 GYEEQNEWYF YSHKDKKYPT GTRTNRATMA GFWKATGRDK SVYDKTKLIG MRKTLVFYKG 120 RAPNGKKSDW IMHEYRLESD ENAPPQEEGW VVCRAFKKRA TGQAKNTETW SSSYFYDEVA 180 TSGVNSIMDP IDYISKQQLN IVGKDLMCKK ELEGMVDGLN YIQSDQFIQL PQLQSPSLPL 240 MKRPSSSMSI TSMDNNYNYK PPLEDEESFE SLISRENKRK KKKQVMMTGD WRELDKFVAS 300 QLMSQEDQGT SGFAGHHIVN QDKNNNDVEM DSSMLLSERE EENRFISGFL STNSDYDIGI 360 CVYDN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-50 | 8 | 159 | 14 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00266 | DAP | Transfer from AT2G18060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.18351s0273.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006201 | 0.0 | AC006201.4 Arabidopsis thaliana chromosome 2 clone T27K22 map c245, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001318244.1 | 0.0 | vascular related NAC-domain protein 1 | ||||
Refseq | NP_179397.1 | 0.0 | vascular related NAC-domain protein 1 | ||||
Swissprot | Q9SL41 | 0.0 | NAC37_ARATH; NAC domain-containing protein 37 | ||||
TrEMBL | A0A178VM15 | 0.0 | A0A178VM15_ARATH; VND1 | ||||
STRING | Bostr.18351s0273.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3686 | 26 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18060.1 | 0.0 | vascular related NAC-domain protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.18351s0273.1.p |
Publications ? help Back to Top | |||
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