PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.18351s0175.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Nin-like

Protein Properties

Length: 928aa MW: 103205 Da PI: 5.0052

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.18351s0175.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.2	3.4e-28	622	672	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l+++F++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Bostr.18351s0175.1.p 622 EKTIGLEVLRQHFAGSLKDAAKSIGVCPTTLKRICRQHGIMRWPSRKIKKV 672 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.984	611	692	IPR003035	RWP-RK domain
Pfam	PF02042	2.3E-25	625	672	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.67E-22	819	914	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.6E-23	827	909	No hit	No description
SMART	SM00666	1.0E-24	829	912	IPR000270	PB1 domain
PROSITE profile	PS51745	24.328	829	912	IPR000270	PB1 domain
CDD	cd06407	1.02E-40	830	911	No hit	No description
Pfam	PF00564	8.9E-16	830	911	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 928 aa Download sequence Send to blast
MEDDGGGEGN GGFSPNSSFG AFPDTAMDLD FMDELLFDGC WLETTDSKSF KQTEQSGSAS 60 TAMNDNSTFL CFGENPSQDS FYNEETERMF PHSPNYLKNN KSMNQEPFNQ AEKFLLEEAE 120 VGKSWWIAPR ASEGPSLSVK ERLLQAISGL NEAVQDKDFL VQIWVPIQRE GKSFLTTWAQ 180 PHLFNQEYSS LAEYRHVSET YNFPADEGMK ELVGLPGRVF LQKLPEWTPD VRFFRRDEYP 240 RIKEARKCDV RGSLALPVFE RSSGTCLGVV EIVTTTQKMI YRQELEKMCK ALEAVDLRSS 300 SNLNTPSSEF LQVYSDFYCA ALPEIKDFLA TVCRNYDLPL ALSWAPCAPQ GKRGSRHSDE 360 NFSQCVSTTD SACSVPDEQS KSFWEACSEH HLLQGEGIVG KAFKASKLFF VPEVTTFSKT 420 NYPLAHHAKI SGLHAALAVP LKSKSGLVEF VLEFFFPKAC LDTEAQQEML KTLSVTLQQD 480 FRSSNLVIDK DLELEVVLPV RETMLFSENP LSGAETAETL TEIQMQESSW ISHMIKANEK 540 GKGVSLSWEY QKEDPKELSS GRENSQLDPN PNNVPLEAEQ FQQASTSGLR VDSNPSTESP 600 LTGGGNMLGS RRPGEKRRTK TEKTIGLEVL RQHFAGSLKD AAKSIGVCPT TLKRICRQHG 660 IMRWPSRKIK KVGHSLKKLQ LVMDSVQGAQ GSIQLDSFYT SFPELNSPNM SSNGPSLKSN 720 EQSSHLNAQT ENDIMAEENT APRSPSSSCS KSSGSSNNNE NTANILVSED ADAVLKRAHS 780 EAELHQVNQE ETKCPARTQS HKTLKEPPVL ENLPLLPGSS NKSLRAGGAI KVKATFGEAR 840 IRFTLLPSCG FRELQQEIAR RFNIDDISWF DLKYLDDDKE WVLLTCEADL EECIDIYRLT 900 ETQTIKISLN EASQVKLGGS FGSTGPS*

Sequence ? help Back to Top

Protein Sequence Length: 928 aa Download sequence Send to blast

MEDDGGGEGN GGFSPNSSFG AFPDTAMDLD FMDELLFDGC WLETTDSKSF KQTEQSGSAS  60
TAMNDNSTFL CFGENPSQDS FYNEETERMF PHSPNYLKNN KSMNQEPFNQ AEKFLLEEAE  120
VGKSWWIAPR ASEGPSLSVK ERLLQAISGL NEAVQDKDFL VQIWVPIQRE GKSFLTTWAQ  180
PHLFNQEYSS LAEYRHVSET YNFPADEGMK ELVGLPGRVF LQKLPEWTPD VRFFRRDEYP  240
RIKEARKCDV RGSLALPVFE RSSGTCLGVV EIVTTTQKMI YRQELEKMCK ALEAVDLRSS  300
SNLNTPSSEF LQVYSDFYCA ALPEIKDFLA TVCRNYDLPL ALSWAPCAPQ GKRGSRHSDE  360
NFSQCVSTTD SACSVPDEQS KSFWEACSEH HLLQGEGIVG KAFKASKLFF VPEVTTFSKT  420
NYPLAHHAKI SGLHAALAVP LKSKSGLVEF VLEFFFPKAC LDTEAQQEML KTLSVTLQQD  480
FRSSNLVIDK DLELEVVLPV RETMLFSENP LSGAETAETL TEIQMQESSW ISHMIKANEK  540
GKGVSLSWEY QKEDPKELSS GRENSQLDPN PNNVPLEAEQ FQQASTSGLR VDSNPSTESP  600
LTGGGNMLGS RRPGEKRRTK TEKTIGLEVL RQHFAGSLKD AAKSIGVCPT TLKRICRQHG  660
IMRWPSRKIK KVGHSLKKLQ LVMDSVQGAQ GSIQLDSFYT SFPELNSPNM SSNGPSLKSN  720
EQSSHLNAQT ENDIMAEENT APRSPSSSCS KSSGSSNNNE NTANILVSED ADAVLKRAHS  780
EAELHQVNQE ETKCPARTQS HKTLKEPPVL ENLPLLPGSS NKSLRAGGAI KVKATFGEAR  840
IRFTLLPSCG FRELQQEIAR RFNIDDISWF DLKYLDDDKE WVLLTCEADL EECIDIYRLT  900
ETQTIKISLN EASQVKLGGS FGSTGPS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.18351s0175.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY090943	0.0	AY090943.1 Arabidopsis thaliana At2g17150 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010515531.1	0.0	PREDICTED: protein NLP1
Refseq	XP_010515539.1	0.0	PREDICTED: protein NLP1
Refseq	XP_010515548.1	0.0	PREDICTED: protein NLP1
Refseq	XP_010515562.1	0.0	PREDICTED: protein NLP1
Refseq	XP_019083798.1	0.0	PREDICTED: protein NLP1
Swissprot	Q8H111	0.0	NLP1_ARATH; Protein NLP1
TrEMBL	R0G2Z6	0.0	R0G2Z6_9BRAS; Uncharacterized protein
STRING	Bostr.18351s0175.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Bostr.18351s0175.1.p

Publications ? help Back to Top
Suzuki W,Konishi M,Yanagisawa S The evolutionary events necessary for the emergence of symbiotic nitrogen fixation in legumes may involve a loss of nitrate responsiveness of the NIN transcription factor. Plant Signal Behav, 2014. [PMID:24270631]