PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.18351s0165.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 281aa    MW: 32361.1 Da    PI: 9.2173
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.18351s0165.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1454e-4581343128
                   NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                           pGfrFhPt+eel+++yLk+ v gk+ ++ evi  ++iy+++Pw+Lp   k  +e+ewyfF++r++k+ +g r++r+t++gyWkatg+d+
  Bostr.18351s0165.1.p   8 PGFRFHPTEEELLDFYLKNVVYGKRSSV-EVIGFLNIYRHDPWELPGLSKIpGEREWYFFVPRERKHGNG-RPSRTTEKGYWKATGSDR 94 
                           9************************999.99***************433333789***********9875.9***************** PP

                   NAM  91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +++s    ++++glkktLvfy+grap g+ktdWvm+eyr+
  Bostr.18351s0165.1.p  95 KIISLsePKRVIGLKKTLVFYRGRAPGGSKTDWVMNEYRM 134
                           **987557778***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.1036152IPR003441NAC domain
SuperFamilySSF1019419.68E-547152IPR003441NAC domain
PfamPF023656.3E-258134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGNETDLPGF RFHPTEEELL DFYLKNVVYG KRSSVEVIGF LNIYRHDPWE LPGLSKIPGE  60
REWYFFVPRE RKHGNGRPSR TTEKGYWKAT GSDRKIISLS EPKRVIGLKK TLVFYRGRAP  120
GGSKTDWVMN EYRMPDNFTL QKDVVLCKIY RKATSLKVLE QRAEMEAKMN QTCPNSPLSS  180
SETISFVGKE ENLMMTWFRA PQERAMEEAN KILTLQENAK NEEKKRETET KEPSSSLKMP  240
FGSLPELQLP ISGVEWGPDQ LLSISPWLQN LTPIVNLLNW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-42815719170NO APICAL MERISTEM PROTEIN
1ut4_B6e-42815719170NO APICAL MERISTEM PROTEIN
1ut7_A6e-42815719170NO APICAL MERISTEM PROTEIN
1ut7_B6e-42815719170NO APICAL MERISTEM PROTEIN
3swm_A6e-42815522171NAC domain-containing protein 19
3swm_B6e-42815522171NAC domain-containing protein 19
3swm_C6e-42815522171NAC domain-containing protein 19
3swm_D6e-42815522171NAC domain-containing protein 19
3swp_A6e-42815522171NAC domain-containing protein 19
3swp_B6e-42815522171NAC domain-containing protein 19
3swp_C6e-42815522171NAC domain-containing protein 19
3swp_D6e-42815522171NAC domain-containing protein 19
4dul_A6e-42815719170NAC domain-containing protein 19
4dul_B6e-42815719170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.18351s0165.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3618040.0AF361804.1 Arabidopsis thaliana At2g17040 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010467456.10.0PREDICTED: NAC domain-containing protein 35
SwissprotQ10S654e-85NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLR0I4C90.0R0I4C9_9BRAS; Uncharacterized protein
STRINGBostr.18351s0165.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38992860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-167NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]