PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.18351s0038.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 288aa    MW: 33148.6 Da    PI: 10.835
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.18351s0038.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.21.7e-1918108799
                           .-HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                    B3   7 psdvlks..grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                            s+ ++s   r  lp +fa++++ +ke s++++++ ++g sWev +  +k+++  ++ ++GW++Fv++n L  ++f++F+++g+++f  
  Bostr.18351s0038.1.p  18 ASSRSSSrcFRRALPHDFARSFS-NKELSRKMKVRARWGSSWEVGI--SKNPRFyFMEKSGWEKFVRDNALGHNEFITFTHKGKMRF-- 101
                           4444444336679******9996.567999****************..******555569********************9999999.. PP

                           EEEEE-S CS
                    B3  93 vvkvfrk 99 
                           +v +f++
  Bostr.18351s0038.1.p 102 TVNIFKQ 108
                           9999875 PP
2B330.75.4e-102092801690
                           EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                    B3  16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                           l++p++ a+ h+ +ke+ ++ ++ +++g ++W+v +  + + g+ ++ +GW   vk+  + + D++ F++++ +e 
  Bostr.18351s0038.1.p 209 LRIPNSVAKYHM-PKEK-TMFKIHHSNGrKTWNVVY--SVGEGQSIFNGGWGYLVKEYPIAVDDICKFTFIKPDEL 280
                           89****996665.5444.588888888779******..9999999************************9975444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.44914109IPR003340B3 DNA binding domain
SMARTSM010191.5E-1715109IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-1816115IPR015300DNA-binding pseudobarrel domain
PfamPF023622.9E-1718108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.9E-1821110IPR015300DNA-binding pseudobarrel domain
CDDcd100174.46E-1531107No hitNo description
PROSITE profilePS508639.206194287IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-14197285IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-8197287IPR003340B3 DNA binding domain
CDDcd100179.80E-7208287No hitNo description
Gene3DG3DSA:2.40.330.101.1E-11208286IPR015300DNA-binding pseudobarrel domain
PfamPF023626.4E-8209282IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MARNANYLRC KEERKMKASS RSSSRCFRRA LPHDFARSFS NKELSRKMKV RARWGSSWEV  60
GISKNPRFYF MEKSGWEKFV RDNALGHNEF ITFTHKGKMR FTVNIFKQDG KEMMQPPQSR  120
AFLASSSRIK TEQGEDGKKE EVVVSSELSN RGPTTAADTI GGGTNKRKLR NLKIPRGLRK  180
WLVCGEILLV FIFVAEFTII IGKTYLIFLR IPNSVAKYHM PKEKTMFKIH HSNGRKTWNV  240
VYSVGEGQSI FNGGWGYLVK EYPIAVDDIC KFTFIKPDEL LLVVLKR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.18351s0038.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2478101e-109AY247810.1 Arabidopsis thaliana hypothetical protein (At2g16210/F7H1.23) mRNA, complete cds; alternatively spliced.
GenBankAY2478111e-109AY247811.1 Arabidopsis thaliana hypothetical protein (At2g16210/F7H1.23) mRNA, complete cds; alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885930.11e-128B3 domain-containing protein At2g16210
SwissprotQ5BPT71e-112Y2621_ARATH; B3 domain-containing protein At2g16210
TrEMBLD7L1431e-127D7L143_ARALL; Transcriptional factor B3 family protein
STRINGBostr.18351s0038.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16210.11e-113B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]