PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.18351s0037.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | B3 | ||||||||
Protein Properties | Length: 225aa MW: 25705.3 Da PI: 10.3757 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.6 | 4.6e-18 | 19 | 113 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 ffk l dv+++++ lp +f+++++ ke s ++++++++grsWev + k+++ ++ ++GW++Fv++n f++++++g++ Bostr.18351s0037.1.p 19 FFKMLQGIDVSSENMRALPHDFVRSFSD-KELSCKMKIRTQWGRSWEVGI--FKNPRFyFMEKSGWEKFVRDNAFGHSKFITLTHKGKM 104 8999999****************99965.57899****************..999999556669*********************9999 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +f +v +f++ Bostr.18351s0037.1.p 105 QF--TVNIFKQ 113 99..9999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.7E-18 | 13 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.33E-18 | 14 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.95E-16 | 18 | 112 | No hit | No description |
SMART | SM01019 | 1.5E-16 | 19 | 114 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.548 | 19 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.3E-16 | 19 | 113 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MTRNPEFVRG KEERNNESFF KMLQGIDVSS ENMRALPHDF VRSFSDKELS CKMKIRTQWG 60 RSWEVGIFKN PRFYFMEKSG WEKFVRDNAF GHSKFITLTH KGKMQFTVNI FKQDGKEMIQ 120 PPQSAAFLAS SSSIKIESEE NDKKEEKVVS SHGRKLKFGK KPAEESQNSK RAKKLVCVRR 180 GSAGASSSTG AKFTIFIKKS YISADTEICC KVESNVQDPS SRWE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.18351s0037.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB013394 | 2e-71 | AB013394.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQD22. | |||
GenBank | CP002688 | 2e-71 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010488975.1 | 1e-104 | PREDICTED: B3 domain-containing protein At2g16210-like | ||||
Swissprot | Q5BPT7 | 2e-83 | Y2621_ARATH; B3 domain-containing protein At2g16210 | ||||
TrEMBL | D7L143 | 7e-98 | D7L143_ARALL; Transcriptional factor B3 family protein | ||||
STRING | Bostr.18351s0037.1.p | 1e-164 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16210.2 | 2e-75 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.18351s0037.1.p |
Publications ? help Back to Top | |||
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