PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.18351s0021.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 481aa    MW: 55583.6 Da    PI: 5.6343
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.18351s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.93.5e-31451741128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkat 86 
                           lppG+ F P+de+l+++yLk+   ++k  + +++ i++v+iy+++P++L +++++++ke +fF++++k+  + gk+++r  ++gyW+ t
  Bostr.18351s0021.1.p  45 LPPGYMFVPSDEDLLNHYLKPFSPDRKiYPSFNIpIHHVNIYNSNPKQLSEEFEKGNKEAWFFITERKTMGKgGKNQKRGDNRGYWNVT 133
                           79********************9999974555666**************988888777665555555555542888999999******* PP

                   NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              k++ + ++  vg k+ L +  g++p+g+ktdW+mhey +
  Bostr.18351s0021.1.p 134 VGAKKINT-GQGGVGYKTALEYCVGKQPNGVKTDWLMHEYWF 174
                           *******9.8889***************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-4033195IPR003441NAC domain
PROSITE profilePS5100537.29545195IPR003441NAC domain
PfamPF023654.9E-1646172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MSMPPRNKRK ERSSPEPQTQ PPSEIPTSFS AADNLSSSSM KPYLLPPGYM FVPSDEDLLN  60
HYLKPFSPDR KIYPSFNIPI HHVNIYNSNP KQLSEEFEKG NKEAWFFITE RKTMGKGGKN  120
QKRGDNRGYW NVTVGAKKIN TGQGGVGYKT ALEYCVGKQP NGVKTDWLMH EYWFESSDDN  180
DNEKVDYALC KIYLTPKAVK RKRAEMKEDE KLKKEKGVLK EEVEQLDLHQ PNQSQLQQPH  240
DNVYQPPQDC LLPAQHLINE KVDYALCKIY LTPKAAKRKK AEMKEDEKLK KEEGVLKEEV  300
EQLDLHQPDQ SQLQQPHDTV YQPPQDCLLP AQHLTNEKVD HALCKIYLTP KAAKKKKADI  360
KEDEKLKKEE SVLKEEVKQL DLHQPDQSQL QQPHDIVYQP PQDCLLPAQH QEPQPQPFRY  420
NFDDFSEFIN FEQEPVIPDD FEDFLTEFIK SHSLDGDEEP NTSGLFEGFV TEGMMNHYTN  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-194519320166NAC domain-containing protein 19
3swm_B5e-194519320166NAC domain-containing protein 19
3swm_C5e-194519320166NAC domain-containing protein 19
3swm_D5e-194519320166NAC domain-containing protein 19
3swp_A5e-194519320166NAC domain-containing protein 19
3swp_B5e-194519320166NAC domain-containing protein 19
3swp_C5e-194519320166NAC domain-containing protein 19
3swp_D5e-194519320166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.18351s0021.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010424216.13e-94PREDICTED: NAC transcription factor 29-like
RefseqXP_010424224.13e-94PREDICTED: NAC transcription factor 29-like
TrEMBLD7LVH13e-92D7LVH1_ARALL; Uncharacterized protein
STRINGBostr.18351s0021.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.13e-72NAC domain containing protein 64