PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.17016s0016.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GRAS
Protein Properties Length: 409aa    MW: 45259.5 Da    PI: 5.2889
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.17016s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS375.66.3e-115424022374
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsP 89 
                            +lLl+cAe v++++l +a++lL+++se++sp g++ +R++ayf++AL+ar+ +   s+ +  l+ ++ s  +s++ +aal++f+ vsP
  Bostr.17016s0016.1.p  42 LSLLLQCAEYVATDHLPEASTLLSEISETCSPFGSSSERVVAYFAQALQARVISsYISGACPPLSDNPLSVVQSQKIFAALQTFNSVSP 130
                           689*************************************************99455666666666666666699999999******** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                           ++kfsh+taNqaI +a++ge+ vHiiD+d++qGlQWpaL++ LasRp++  s+RiTg+g     s+e l +tg+rLa+fA++l++pfef
  Bostr.17016s0016.1.p 131 LIKFSHFTANQAIFQALDGEDSVHIIDLDVMQGLQWPALFHILASRPRKLRSIRITGFGF----SSELLASTGRRLADFASSLNLPFEF 215
                           ************************************************************....99*********************** PP

                  GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyys 265
                           +++  k  + +e+++L +++gEa++V+++   hrl+d +++  +    +L+++++l+P++++vveqe+++  +++sFl rf+eal+yys
  Bostr.17016s0016.1.p 216 HPIEGKIGNLIEPSQLGTRQGEAVVVHWMQ--HRLYDVTGNYLE----TLDILRRLKPNLITVVEQELSYydDGGSFLGRFVEALHYYS 298
                           **988888899******************9..****99999988....*******************99987788************** PP

                  GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                           alfd+le +l++es er +vE+ +l+ ei+n+va+ g       ++ +kW+e l ++GF+pv+l+ + a+qa lll + +++gy++ e+
  Bostr.17016s0016.1.p 299 ALFDALEDGLGEESVERFTVEQLVLATEIRNIVAHGGGG-----RRRMKWKEELYRVGFRPVSLRGNPATQAGLLLGMLPWNGYTLVED 382
                           **************************************9.....44578**************************************** PP

                  GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                           +g+l lgWkd pL+++SaW+
  Bostr.17016s0016.1.p 383 NGTLRLGWKDLPLLTASAWK 402
                           *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.20315382IPR005202Transcription factor GRAS
PfamPF035142.2E-11242402IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MTTKRIDRDF PSPDDPSVAK RRIDDIEFPE ETLGGAAAIK LLSLLLQCAE YVATDHLPEA  60
STLLSEISET CSPFGSSSER VVAYFAQALQ ARVISSYISG ACPPLSDNPL SVVQSQKIFA  120
ALQTFNSVSP LIKFSHFTAN QAIFQALDGE DSVHIIDLDV MQGLQWPALF HILASRPRKL  180
RSIRITGFGF SSELLASTGR RLADFASSLN LPFEFHPIEG KIGNLIEPSQ LGTRQGEAVV  240
VHWMQHRLYD VTGNYLETLD ILRRLKPNLI TVVEQELSYY DDGGSFLGRF VEALHYYSAL  300
FDALEDGLGE ESVERFTVEQ LVLATEIRNI VAHGGGGRRR MKWKEELYRV GFRPVSLRGN  360
PATQAGLLLG MLPWNGYTLV EDNGTLRLGW KDLPLLTASA WKSSQPSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1404740124377Protein SCARECROW
5b3h_D1e-1404740124377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.17016s0016.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0170670.0AB017067.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJC20.
GenBankBT0297600.0BT029760.1 Arabidopsis thaliana At5g41920 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020875190.10.0scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLD7MIP90.0D7MIP9_ARALL; Scarecrow transcription factor family protein
STRINGBostr.17016s0016.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125122631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]