PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.15774s0348.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | ERF | ||||||||
Protein Properties | Length: 235aa MW: 25185.3 Da PI: 4.4592 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.8 | 7.2e-15 | 67 | 116 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s ++G+r + +g+Wv+eIr+p++ ++r++lg++ +e+Aa+a++ a+++l+g Bostr.15774s0348.1.p 67 SVFRGIRLR--NGKWVSEIREPRK---TTRIWLGTYPVPEMAAAAYDVAALALKG 116 689***975..6*********843...5************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.9E-9 | 67 | 116 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.41E-16 | 67 | 124 | No hit | No description |
SuperFamily | SSF54171 | 3.79E-17 | 67 | 124 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.4E-25 | 68 | 130 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-25 | 68 | 124 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.361 | 68 | 124 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-6 | 69 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-6 | 106 | 126 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MSNTNTPITG NQETTTFREV SIALPLKPSD QSPQSSPSSS SSPRPSSLAA GGSPAKRTAT 60 GLSGKHSVFR GIRLRNGKWV SEIREPRKTT RIWLGTYPVP EMAAAAYDVA ALALKGSDAV 120 LNFPGLALTY VPPVSNSAVD IRAAASKAAE MKQPDPGETE KVLDPVQPGK EEEEEEDGLV 180 SLEFMDEDAM LNIPTLLTEM AEGMLMSPPR MMITPTVEDD SPENHQGDDL WSYK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00558 | DAP | Transfer from AT5G52020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.15774s0348.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB015478 | 0.0 | AB015478.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSG15. | |||
GenBank | AK176464 | 0.0 | AK176464.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL24-25-F17. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010442714.1 | 1e-113 | PREDICTED: ethylene-responsive transcription factor ERF025-like | ||||
Swissprot | Q9FJ90 | 1e-111 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | R0GRU9 | 1e-111 | R0GRU9_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.15774s0348.1.p | 1e-170 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13457 | 14 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 1e-107 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.15774s0348.1.p |
Publications ? help Back to Top | |||
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