PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15774s0222.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 194aa    MW: 22967.8 Da    PI: 4.6305
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15774s0222.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.13.1e-31171381128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrF+P de+lv eyL+kkv ++++++   ++e++ ++v+PwdL     +++ke+y+F+k+++++    rk r t sgyW++  + 
  Bostr.15774s0222.1.p  17 LPPGFRFDPDDEDLVFEYLAKKVLHRPMDF--DLPELRSCNVDPWDLL---GEKNKEMYYFVKKEERE----RKGRETLSGYWEECEE- 95 
                           79*************************999..49*************6...56789*******99875....899********98766. PP

                   NAM  90 kevlskkgel....vglkktLvfykgrapkgektdWvmheyrl 128
                           +ev+++++++     g +kt+ fy g++p+g+ t W+m e+rl
  Bostr.15774s0222.1.p  96 EEVMEAGDRDcihlEGRRKTFSFYIGKRPRGTITPWIMYEFRL 138
                           677776444455559**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-327148IPR003441NAC domain
PROSITE profilePS5100532.68617167IPR003441NAC domain
PfamPF023656.1E-1918138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MDISAQRFAM NGRSMRLPPG FRFDPDDEDL VFEYLAKKVL HRPMDFDLPE LRSCNVDPWD  60
LLGEKNKEMY YFVKKEERER KGRETLSGYW EECEEEEVME AGDRDCIHLE GRRKTFSFYI  120
GKRPRGTITP WIMYEFRLLP SRATRWSSSP LPRTEVGKWK AVKVVVKEEN EEEIMEDEHE  180
SDDSDGEEVI QSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-191514215147NO APICAL MERISTEM PROTEIN
1ut4_B4e-191514215147NO APICAL MERISTEM PROTEIN
1ut7_A4e-191514215147NO APICAL MERISTEM PROTEIN
1ut7_B4e-191514215147NO APICAL MERISTEM PROTEIN
3swm_A5e-191514218150NAC domain-containing protein 19
3swm_B5e-191514218150NAC domain-containing protein 19
3swm_C5e-191514218150NAC domain-containing protein 19
3swm_D5e-191514218150NAC domain-containing protein 19
3swp_A5e-191514218150NAC domain-containing protein 19
3swp_B5e-191514218150NAC domain-containing protein 19
3swp_C5e-191514218150NAC domain-containing protein 19
3swp_D5e-191514218150NAC domain-containing protein 19
4dul_A4e-191514215147NAC domain-containing protein 19
4dul_B4e-191514215147NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15774s0222.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0151500.0BT015150.1 Arabidopsis thaliana At5g50820 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_199895.31e-124NAC domain containing protein 97
TrEMBLA0A178UQH21e-123A0A178UQH2_ARATH; NAC097
TrEMBLQ9FGQ11e-123Q9FGQ1_ARATH; NAC domain containing protein 97
STRINGBostr.15774s0222.1.p1e-140(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146661821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50820.13e-91NAC domain containing protein 97