PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.15774s0200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NF-YC | ||||||||
Protein Properties | Length: 186aa MW: 20203.7 Da PI: 4.3237 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 157.5 | 2.1e-49 | 17 | 116 | 1 | 100 |
NF-YC 1 qlksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 qlks+w k+++ + d+knhe+Plarik+i+k+d+dv+mi+ eaP+l+ska e+f+++lt+rsw ha+enkr t+++sdiaaav+rt + Bostr.15774s0200.1.p 17 QLKSYWLKEMKGDLDLKNHEFPLARIKRIMKFDPDVTMIAGEAPILFSKASEMFVMDLTMRSWFHAQENKRITIQRSDIAAAVARTYTM 105 89*************************************************************************************** PP NF-YC 90 dflvdivprde 100 dfl+d+vp+de Bostr.15774s0200.1.p 106 DFLLDVVPEDE 116 ********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 9.78E-28 | 2 | 108 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.5E-30 | 31 | 99 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.4E-17 | 36 | 99 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MENNNGNHQQ PPQDNPQLKS YWLKEMKGDL DLKNHEFPLA RIKRIMKFDP DVTMIAGEAP 60 ILFSKASEMF VMDLTMRSWF HAQENKRITI QRSDIAAAVA RTYTMDFLLD VVPEDEPEAA 120 DEDPVAMSDH DDGELPPGMV IGTPVVGGLG IYAPQPQKQA WAGAWTAAPG VGVDAAEGNG 180 GNGGN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 8e-36 | 23 | 113 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.15774s0200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002865814.1 | 4e-92 | nuclear transcription factor Y subunit C-8 | ||||
Swissprot | Q4PSE2 | 8e-84 | NFYC8_ARATH; Nuclear transcription factor Y subunit C-8 | ||||
TrEMBL | D7MQ91 | 8e-91 | D7MQ91_ARALL; Uncharacterized protein | ||||
STRING | Bostr.15774s0200.1.p | 1e-135 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17675 | 5 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27910.1 | 2e-77 | nuclear factor Y, subunit C8 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.15774s0200.1.p |
Publications ? help Back to Top | |||
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