PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.15774s0197.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NF-YC | ||||||||
Protein Properties | Length: 194aa MW: 21273.2 Da PI: 5.845 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 155.7 | 7.9e-49 | 35 | 133 | 1 | 100 |
NF-YC 1 qlksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 q++++w++q+ a+d++nh++Plarikki+k d+dv+m+saeaP+llskace+fi++lt+rswlh+ en+r+t+++sdi+ av+r++ f Bostr.15774s0197.1.p 35 QVRNYWIEQVM-ASDVRNHQFPLARIKKIMKLDPDVHMVSAEAPILLSKACEMFIVDLTMRSWLHTVENTRQTIHRSDISVAVSRSFDF 122 789*****985.68*************************************************************************** PP NF-YC 90 dflvdivprde 100 dflvd+ prde Bostr.15774s0197.1.p 123 DFLVDVLPRDE 133 *********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.09E-27 | 47 | 133 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.7E-31 | 47 | 116 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.1E-18 | 53 | 116 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
LSHPTRGKLV SWFSISYSQP LPSPSYSQPL PYSLQVRNYW IEQVMASDVR NHQFPLARIK 60 KIMKLDPDVH MVSAEAPILL SKACEMFIVD LTMRSWLHTV ENTRQTIHRS DISVAVSRSF 120 DFDFLVDVLP RDESVAAAAA DPVAMPHQDD GVLPPGMVIG HPVADCNGMY PPPPQTQEWP 180 AAPGEIGGSS GGN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-35 | 47 | 131 | 11 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.15774s0197.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_199858.1 | 4e-75 | nuclear factor Y, subunit C7 | ||||
Swissprot | Q9FGP8 | 4e-76 | NFYC7_ARATH; Nuclear transcription factor Y subunit C-7 | ||||
TrEMBL | A0A178UBR1 | 6e-74 | A0A178UBR1_ARATH; NF-YC7 | ||||
STRING | Bostr.15774s0197.1.p | 1e-141 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20210 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50470.1 | 1e-68 | nuclear factor Y, subunit C7 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.15774s0197.1.p |
Publications ? help Back to Top | |||
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