PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.15774s0178.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 235aa MW: 26609 Da PI: 8.5839 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 79.4 | 8.1e-25 | 4 | 145 | 5 | 128 |
NAM 5 frFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 + F+P + el+ +yL+kk++++ l +e+ i+ev+i+++eP ++ + +k +++ wy s+ ++ + + +r++ra ++g+Wk tgk++ Bostr.15774s0178.1.p 4 YTFNPPEYELIIKYLNKKITKEGddLGAESEINEVNICHHEPAEISALAKIpSSQTWYIISPVERLNGRHQRRRRASRTGIWKVTGKKT 92 68*****************999854555566**************95333335679********************************* PP NAM 91 evlskkgelvglkktLvfy...............kgrapkgektdWvmheyrl 128 v++ +g+ +g k+ L f + + ++ +k++W++he++ Bostr.15774s0178.1.p 93 MVKDINGKIIGFKRYLGFKetkknysssssfpssSSTGRQQNKSNWIIHEFHS 145 *******************77766666665555424445555*********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 28.869 | 1 | 163 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.89E-29 | 4 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.2E-14 | 4 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MSTYTFNPPE YELIIKYLNK KITKEGDDLG AESEINEVNI CHHEPAEISA LAKIPSSQTW 60 YIISPVERLN GRHQRRRRAS RTGIWKVTGK KTMVKDINGK IIGFKRYLGF KETKKNYSSS 120 SSFPSSSSTG RQQNKSNWII HEFHSSIDHP KKEDFVLCKL MKNEGAPPSG AVAEAFPAAT 180 SPIISPYAMQ NDDISVYDYG GYFLDVLGNT FTPFQNTDLL DQPYYSHDVL ETWR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.15774s0178.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018511050.1 | 2e-57 | PREDICTED: NAC domain-containing protein 62 isoform X1 | ||||
Refseq | XP_018511051.1 | 1e-57 | PREDICTED: NAC domain-containing protein 62 isoform X2 | ||||
TrEMBL | A0A087HK38 | 2e-56 | A0A087HK38_ARAAL; Uncharacterized protein | ||||
STRING | Bostr.15774s0178.1.p | 1e-176 | (Boechera stricta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04430.1 | 7e-42 | NAC domain containing protein 49 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.15774s0178.1.p |